Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1681 235 1e-59 seq2180 174 3e-41 >seq1681 Length=1492 Score = 235 bits (260), Expect = 1e-59 Identities = 184/217 (85%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| |||||| ||||| | ||| |||||||| ||| ||| ||||| |||| ||| Sbjct 706 CTTTACAGACCGAAGTCCTTCCT-CACTCACGCGGCGTTG-CTGCGTCAGGGTTTCCCCC 649 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648 ATTGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 589 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | ||||||||||||||||| | || |||||||||||||| ||| ||||| || Sbjct 588 TGTGTCCGATCATCCTCTCAGACCGGATAGACATCGTCGCCTTGGTAGGCCTTTACCCCA 529 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 ||||||||||||| | |||| ||||| |||||| Sbjct 528 CCAACTAGCTAATGTCCCGCAGGCCCATCTAATAGCG 492 >seq2180 Length=1048 Score = 174 bits (192), Expect = 3e-41 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 50 GGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 109 ||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1048 GGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGT 989 Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 |||||| |||||||| |||| |||||||| | ||| ||| |||||||||| || Sbjct 988 CTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCATCATCGCCTTGGTAAG 929 Query 170 CCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 || |||||| |||||||||||||| ||| | |||||||| Sbjct 928 CCGTTACCTTACCAACTAGCTAATGGGACGCATGCTCATCT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071974850880