Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1404 367 5e-99 seq1719 300 6e-79 seq1384 291 3e-76 seq2052 125 3e-26 >seq1404 Length=2053 Score = 367 bits (406), Expect = 5e-99 Identities = 419/552 (76%), Gaps = 18/552 (3%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGT-TGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCT 111 || ||| ||||||| | || ||| |||||||| || ||||||||| | | ||||||| Sbjct 1019 GGTATTGTGAGTTTGATATGGTTT-GGTAAGCTGGTAAGCCCCCTAGCCAAGTCAGTGCT 1077 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 |||| || | | ||||||||||||||||||||||||| |||||||||||| Sbjct 1078 ATACCCCCATTGGTATTCGTCGGACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTA 1137 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 ||||| | |||||||||||||||||||||| ||||| ||||||| |||||||||| Sbjct 1138 TCACGGAATTTGATTGGCCTTTCACCCCTAACCACAAATCATCCCAGACGTTTTCAACCG 1197 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | ||||||||||||||| ||| |||||| |||||||||||| ||||| ||| ||| Sbjct 1198 TCACGAGTTCGGTCCTCCACGAGGTATTACCCCCGCTTCAACCTGTTCATGGCTAGCTCA 1257 Query 292 CTTCGCTTCGGGTCT-TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 || ||||||||| ||| | ||| ||| || |||||||||| |||||| |||| |||| Sbjct 1258 TCCCGTTTCGGGTCTATGA-CATGCTACTAAT-CGCCCTATTCAGACTCGGTTTCCCTAC 1315 Query 351 GGCTACCCCAC--ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 |||||| || |||| |||||||||| ||| | | || ||||| | |||| | || Sbjct 1316 GGCTACACCTGCAACGGCTTAACCTCGCAACATATCATAA-CTCGCTGAATCATAATGCA 1374 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| ||| | ||| ||| || | | ||| ||| | ||||| | | Sbjct 1375 AAAGGTACGTCATCAGGCTTTAC--AATAACC-------CTCTGACTGTTTGTAAGTGTA 1425 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTA 527 |||||||| | |||||||||||||| | ||||| ||||||| ||||||||||||||| Sbjct 1426 TGGTTTCAAGATCTATTTCACTCCCCTCATCGGGGTTCTTTTCATCTTTCCCTCACGGTA 1485 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 ||||| | |||||||||| |||| ||||||| | ||| |||||||||| |||| |||| Sbjct 1486 CTTGTTCACTATCGGTCAGCAAGTAGTATTTTGCCTTGGAGGGTGGTCCCCCCAGCTTCA 1545 Query 588 CACGAAATTTCA 599 || | ||||| Sbjct 1546 GACAAGGTTTCA 1557 >seq1719 Length=1442 Score = 300 bits (332), Expect = 6e-79 Identities = 405/554 (73%), Gaps = 25/554 (5%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||| | || || |||| | || ||||| ||| | || |||| Sbjct 993 GCATTCGGAGTTCGTCTGGATTTGGTAGGATTTGACTCCCCCGCACCCAATCGGTAGCTC 934 Query 113 TACCTCCGGGAAGAAAC---ACGC-GACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| | |||| |||| ||||||| |||||| |||||||||||| || || Sbjct 933 TACCTCT---ATCAAACTCTACGCCGACGCTGTTCCTAAAAACATTTCGGGGAGTACGAG 877 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | |||||||||||||||||||||||| || |||||||||| | ||||||| Sbjct 876 CTATTTCCCAGTTTGATTGGCCTTTCACCCCTACCCTCAGGTCATCCGGAAACTTTTCAA 817 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | |||||||||||||| | |||| |||||||||||||| || |||| Sbjct 816 CGTTTATCGGTTCGGTCCTCCATTACATGTTACTGCAACTTCAACCTGCCCAAGGGTAGA 757 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | |||| |||| || | ||| || ||||||||| |||||||||||||| Sbjct 756 TCACAAGGTTTCGCGTCTACCTCATCTGACT-ATGCGCCCTATTAAGACTCGCTTTCGCT 698 Query 349 ACGGCTAC--CCCACACGG-GTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 ||||| | ||| | || ||||||| || | |||| |||||| ||||||||| | Sbjct 697 TCGGCTGCGTCCCTGAAGGACTTAACCTTGCCAGACAAGAGTAACTCGTAGGCTCATTAT 638 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 |||||||||||| ||||| | || | || ||||| || | ||||| || Sbjct 637 GCAAAAGGCACGCTGTCAC---------AGAA--CTTGTCTGCTCCAACCGCTTGTAAGC 589 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACG 524 ||| |||||||||| || ||||||||||| | ||||| |||||||||||||||||||| Sbjct 588 ACACGGTTTCAGGTTCT-TTTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCCTCACG 530 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584 ||||| || | ||||||||| | |||||||||||| |||| | | |||| | | ||| Sbjct 529 GTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTACCAGATGGTGCTGGTGGAT 470 Query 585 TCACACGAAATTTC 598 || ||| ||||| Sbjct 469 TCCCACAGGATTTC 456 >seq1384 Length=2115 Score = 291 bits (322), Expect = 3e-76 Identities = 332/442 (75%), Gaps = 18/442 (4%) Strand=Plus/Minus Query 154 TTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCAT 213 ||||||||| || |||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 2115 TTCGGGGAGTACGAGCTATTTCCGAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCAT 2056 Query 214 CCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAAC 273 || | |||||||| | | ||||||| ||||||| || ||||| |||||| | Sbjct 2055 CCGAAGACTTTTCAACGTCAACCGGTTCGGACCTCCACTATGTGTTACCACAGCTTCATC 1996 Query 274 CTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTC 333 |||||||||| |||||||| | |||| |||| | | ||| |||||||||| Sbjct 1995 CTGCCCATGGGTAGATCACACGGTTTCGCGTCTAACACTACCGACTATGGCGCCCTATTC 1936 Query 334 GGACTCGCTTTCGCTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAAC 390 |||||||||||||||||| | | || | ||| ||| || ||||| ||| Sbjct 1935 AGACTCGCTTTCGCTACGGATCCGGACCTGAAGTCCTTATCCTTGC-CGGCAACGTTAAC 1877 Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 ||| ||||||||| | ||||||||||||||||||| ||||| | |||| Sbjct 1876 TCGTAGGCTCATTATGCAAAAGGCACGCCGTCACC---CCACTAAAGG--------GCTC 1828 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC--CCGCCAGGGGTACTTT 508 |||| | |||||||| |||||||||||| || ||||||||| || ||| |||| Sbjct 1827 CGACCGCTTGTAGGCGCATGGTTTCAGGATCTGTTTCACTCCGTTATTCA-CGGTTCTTT 1769 Query 509 TCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACG 568 ||||||||||||||||||||| || | ||||||||| | |||||||||||| ||| || Sbjct 1768 TCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGCG 1709 Query 569 GGTGGTCCCGCCAGATTCACAC 590 | |||||||||| |||||| || Sbjct 1708 GATGGTCCCGCCGGATTCAGAC 1687 >seq2052 Length=1134 Score = 125 bits (138), Expect = 3e-26 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT 506 ||||| || ||||| ||| ||||||||| |||||||||||||| || ||||| || Sbjct 64 GCTCCTACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCT 123 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||| |||||||||||||||||| || | ||||||||| | |||||||||| ||| Sbjct 124 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGG 183 Query 567 CGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 || ||||||| ||| ||||| || ||||| Sbjct 184 AGGATGGTCCCCCCATATTCAGACAGGATTTC 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817557359104