Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2052 298 1e-78 seq1384 277 4e-72 seq1719 246 8e-63 seq1404 244 3e-62 >seq2052 Length=1134 Score = 298 bits (330), Expect = 1e-78 Identities = 207/233 (89%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 5 TTGCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCTT----G 60 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 ||||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||||| Sbjct 61 CGGGCTCCTACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGGGG 119 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 120 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATGATGAGTATTTAGCC 179 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct 180 TTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCTCGTGTCCCGCCCTACT 232 >seq1384 Length=2115 Score = 277 bits (306), Expect = 4e-72 Identities = 321/417 (77%), Gaps = 17/417 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | |||||||| |||||| | || ||| Sbjct 2066 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGACCTCCACTATGT-GTT 2010 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| | ||| || ||||||||| || |||||| | |||||| || ||||| | | | Sbjct 2009 ACCACAGCTT-CATCCTGCCCATGGG-TAGATCACACGGTTT-CGCGTCTAACACT-ACC 1954 Query 129 GACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT--ATTCGGTTAA 182 ||||| | ||||||| | ||||||||||| ||||||| ||| ||| | || | | Sbjct 1953 GACTATGGCGCCCTATTCAGACTCGCTTT-CGCTACGGATCCGGACCTGAAGTCCTT--A 1897 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||| | ||| ||| | | |||||| ||||||| |||| ||||||| || Sbjct 1896 TCCTTGCCGGCAACGTTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCCACT 1837 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || ||||||| || ||||||| || | ||||||||||||| ||||||||| | | | Sbjct 1836 AAA-GGGCTCCGACCGCTTGTAGGCGCATGGTTTCAGGATCTGTTTCACTCCGTTATTCA 1778 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||| Sbjct 1777 CGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTA 1718 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| |||||||||| || ||||||||| ||||| ||||| ||| ||||||| Sbjct 1717 GCCTTGGCGGATGGTCCCGCCGGATTCAGACAGGGTTTCACGTGCCCCGCCCTACTC 1661 >seq1719 Length=1442 Score = 246 bits (272), Expect = 8e-63 Identities = 284/365 (78%), Gaps = 18/365 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 || |||||||| ||| ||||||| ||||| | |||||||||||||||| ||| ||| Sbjct 842 CCTCAGGTCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCA-TTACATGTT 786 Query 69 ACC-CAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 || |||| ||||||||||||| ||| |||||| | ||||| || ||||| || | Sbjct 785 ACTGCAAC--TTCAACCTGCCCA-AGGGTAGATCACAAGGTTT-CGCGTCTACCTC--AT 732 Query 128 C-GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCTATTCGGTTAAG 183 | ||||| ||||||| ||||||||||||| |||| || || | ||| | | | Sbjct 731 CTGACTATGCGCCCTATTAAGACTCGCTTT-CGCTTCGGCTGCGTCCCTGAAGGACTTAA 673 Query 184 CTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | |||||| || | ||| ||| | | |||||| ||||||| |||| ||||| ||| Sbjct 672 CCTTGCCAGACAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCTGTCACAGAACT 613 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || ||||| || ||||||| ||| ||||||||||| ||| |||||||||||| | || Sbjct 612 T-GTCTGCTCCAACCGCTTGTAAGCACACGGTTTCAGGTTCT-TTTCACTCCCCTGTTCG 555 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||| Sbjct 554 GGGTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTA 495 Query 363 GCCTT 367 ||||| Sbjct 494 GCCTT 490 >seq1404 Length=2053 Score = 244 bits (270), Expect = 3e-62 Identities = 299/396 (76%), Gaps = 9/396 (2%) Strand=Plus/Plus Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTG 86 || |||||||| || ||||||||||||| ||| |||||| ||| ||||||| Sbjct 1185 ACGTTTTCAACCGTCACGAGTTCGGTCCTCCACGAGGTA-TTACCCCCGCTT-CAACCTG 1242 Query 87 CCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAA 146 ||| || ||| || || |||| ||||||||| | || |||| ||||||| | | Sbjct 1243 TTCAT-GGCTAGCTCATCCCGTTT-CGGGTCTATGACAT-GCTACTAATCGCCCTATTCA 1299 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATT-CGGTTAAGCTTTGCCACTGAAAATAAGTC 204 |||||| ||| | ||||| || | ||| ||| | | | | || || | |||| || Sbjct 1300 GACTCGGTTTCC-CTACGGCTACACCTGCAACGGCTTAACCTCGCAACATATCATAACTC 1358 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTTGT 263 ||||| ||| || ||||||||||| ||| | | | | | || |||| |||| Sbjct 1359 GCTGAATCATAATGCAAAAGGTACGTCATCAGGCTTTACAATAACCCTCTGACTGTTTGT 1418 Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 | | || ||||||| ||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1419 AAGTGTATGGTTTCAAGATCTATTTCACTCCCCTCATCGGGGTTCTTTTCATCTTTCCCT 1478 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383 ||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| Sbjct 1479 CACGGTACTTGTTCACTATCGGTCAGCAAGTAGTATTTTGCCTTGGAGGGTGGTCCCCCC 1538 Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||||||||| ||||| ||||| |||||||||| Sbjct 1539 AGCTTCAGACAAGGTTTCACGTGCCTCGTCCTACTC 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241570872064