Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1901 89.7 6e-16 seq2057 80.6 3e-13 >seq1901 Length=1246 Score = 89.7 bits (98), Expect = 6e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 39 TTCTATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCT 98 ||| |||||||||||||||||||||| |||| | ||||| | ||||||||||||||| | Sbjct 1 TTCCATTATTCCATGCTAATGTATTCCGGCGAAGACCTGCCTGGAACACTCTAATTTTTT 60 Query 99 CAAGGTAAA 107 ||||||||| Sbjct 61 CAAGGTAAA 69 >seq2057 Length=1129 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1089 CCAACAGAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 1031 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1030 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595186472964