Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1404 241 3e-61 seq1719 123 6e-26 >seq1404 Length=2053 Score = 241 bits (266), Expect = 3e-61 Identities = 294/396 (74%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 3 ACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCT 62 ||||||||| |||||||| |||| |||||||| |||| |||| || || || ||| Sbjct 574 ACTACGCCTTTCGGCCTCATGTTAGAACCCGACTAACCCTGGGCGGAGTCACCTGGCCCA 633 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 ||||||||| ||| ||||||| | ||||| ||| | || | |||||||||| | || Sbjct 634 GGAACCCTTAGATTTACGGCGGAAGTGATTCTCACACTTCTTATCGCTACTCATTTCAGC 693 Query 122 ATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 || | || | | ||||| | | | | || | ||||| | | |||| | Sbjct 694 ATCAGCTCTTGTGAGACCTCCAGCGCTCCTT-ACGGTACGCCTTCATCGGCAAACACAAT 752 Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 |||| |||||| | ||| || ||| |||||||| | |||| ||||||| ||| Sbjct 753 GCTCTCCTACCAATATTTACATATT-CCATAGCTTCGGTACGTCACTTTAGCCCCGTTAC 811 Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGC 300 ||| ||||||| |||||||| | ||||||||||||||||| ||||| |||| ||||||| Sbjct 812 ATTTTCGGCGCAGAATCACTAGTCCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGC 871 Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360 ||| ||||||||||||||| |||| | | || |||||| |||| ||||| || || | Sbjct 872 TTCTAAGCCAACCTCCTGGATGTCAAAGTAATTCCACAACCTTCTCCACTTAGCGACGAT 931 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || ||| |||||||||||| |||||||| ||||||| Sbjct 932 TTTGGGACCTTAGCTGATGGTCTGGGCTCTTTCCCT 967 >seq1719 Length=1442 Score = 123 bits (136), Expect = 6e-26 Identities = 273/394 (69%), Gaps = 19/394 (5%) Strand=Plus/Minus Query 20 CGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCTGGAACCCTTGGATAAT 78 ||||||||| ||||||| |||| | | || ||| |||| | |||| |||||| | Sbjct 1428 CGCCTTAGGTCCCGACTGACCCTGATCCGATTAACGTTGATCA-GGAAACCTTGGTCTTT 1370 Query 79 CGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACTCGCATCA 137 ||| || |||| ||| |||||| | | || |||| |||||| |||| | | ||| | Sbjct 1369 CGGTGGGCGGGTTTCTCACCCGCCTTATCGTTACTTATGCCTACATTTGCTTTTCCATAA 1310 Query 138 ACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCCCCTACCCAACC- 196 |||||| || | || | ||||| || || | ||||||||||| | Sbjct 1309 CCTCCACAGTTCATTG-CCAAACTGCTTCCCCGGCGATGGAATGCTCCCCTACCAGATGT 1251 Query 197 ACACAGGTTG----CCACAGCTTCGG--CGGATAACTTAAGCCCCGCTACATTATCGGCG 250 || | || ||| |||||||| | | | ||| | |||| | |||||| || Sbjct 1250 ACCTAAGTACAAATCCATAGCTTCGGTACCGTT--CTTGATGCCCGTTT-ATTATCCACG 1194 Query 251 CGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCC 309 | | || ||| |||||||| ||||||||||||| || || |||||||||||||||| Sbjct 1193 CCCGGCCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCC 1134 Query 310 AACCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGG 367 ||| |||| | ||||| ||||| || || || | | ||| || || | || |||| Sbjct 1133 AACATCCTAGCTGTCTGGGCAACCGGACCTCGTTAGTTCAACTTAGA-ACGAATTTGGGG 1075 Query 368 -CCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||||||| |||||| | ||||||||||| Sbjct 1074 ACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177572373504