Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1681 251 2e-64 seq2180 147 5e-33 >seq1681 Length=1492 Score = 251 bits (278), Expect = 2e-64 Identities = 319/434 (74%), Gaps = 40/434 (9%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||| |||||| ||||| ||| |||||||| | ||||| ||||| || | ||||| Sbjct 706 CTTTACAGACCGAAGTCCTTCCTCACTCACGCGGCGTTGCTGCGTCAGGGTTTCCCCCAT 647 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 TGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 587 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 || | | ||||||||||||||| | ||| |||||||||| ||| |||| ||||||| || Sbjct 586 TGTCCGATCATCCTCTCAGACCGGATAGACATCGTCGCCTTGGTAGGCCTTTACCCCACC 527 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGC----CCGAAGGTCCCCCTC 239 ||||||||||| | || |||| |||| || | || | ||| | || Sbjct 526 AACTAGCTAATGTCCCGCAGGCCCATCTAATAGCGA-ATGCATATACAGAGG---CATTC 471 Query 240 TTT-------GGTCTTGCGA-CGT------TATGCGGTATTAGCCACCGTTTCCAGTGGT 285 ||| ||||| | ||| ||||||| |||||||| |||| |||| Sbjct 470 TTTCAAGCACAGTCTTAAAACCGTGCTTCGTATGCGGCATTAGCCAAAATTTCTTCTGGT 411 Query 286 TATCCCCCTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCAC--TCGTCA- 341 ||| |||||| | ||||| || || | |||||||||||| |||||| | ||| Sbjct 410 TATTCCCCTCTAAAAGGCAGGTCACCTACGTGTTACTCACCCGTGCGCCACTTTACTCAT 351 Query 342 -GCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCA 400 ||||| | || || ||||||||||||||||||||||| ||||||| Sbjct 350 CCCGAAGGA-----CT--------TTCACGTTCGACTTGCATGTGTTAGGCACGCCGCCA 304 Query 401 GCGTTCAATCTGAG 414 |||||| |||||| Sbjct 303 GCGTTCGTTCTGAG 290 >seq2180 Length=1048 Score = 147 bits (162), Expect = 5e-33 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 51 GGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 ||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1048 GGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGT 989 Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 |||||| ||||||||| | || |||||||| | ||| ||| |||||| ||| | Sbjct 988 CTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCATCATCGCCTTGGTAAG 929 Query 171 CCATTACCCCGCCAACTAGCTAAT 194 || ||||| ||||||||||||| Sbjct 928 CCGTTACCTTACCAACTAGCTAAT 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222371322496