Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1681 291 2e-76 seq2180 183 9e-44 >seq1681 Length=1492 Score = 291 bits (322), Expect = 2e-76 Identities = 272/348 (78%), Gaps = 27/348 (8%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||||||||||||| ||||| ||| ||||||||||||||| || ||| |||||||| Sbjct 516 ATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATGTCTATCCGGTCTGAGAGG 575 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 576 ATGATCGGACACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGG 635 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 |||||||| ||||||| ||| ||||| |||||||||||||||||| || ||||| |||| Sbjct 636 AATATTGCGCAATGGGGGAAACCCTGACGCAGCAACGCCGCGTGAGTGAGGAAGGACTTC 695 Query 348 GGGTCGTAAAGCTCTGT-----------------------CCTCA-AGGAAGAT--AATG 381 || |||||||||||| || | ||| ||| || Sbjct 696 GGTCTGTAAAGCTCTGTTAATGTGGAAAAATGGCAGTTGGTCTAATAGGCCGATTGTTTG 755 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 | ||||| |||||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 756 ATGGTACACATAGAGGAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGG 815 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | || |||||| | |||| ||| | |||||||||| | ||||||| || Sbjct 816 GTGCAAGCGTTGTTCGGATTTA-TTGGGCGTAAAGCGCGCGTAGGCGG 862 >seq2180 Length=1048 Score = 183 bits (202), Expect = 9e-44 Identities = 131/151 (87%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||| ||||||||||||||||||||||||||||||||||||| ||| |||| | || Sbjct 898 GCGTCCCATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGATGATGGGTAGGGGTCC 957 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||||| |||| ||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 958 TGAGAGGGAGATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 1017 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||| ||||||||| |||||||| ||||| Sbjct 1018 AGTGAGGAATATTGGTCAATGGGCGCAAGCC 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497564866304