Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1681 338 2e-90 seq1384 114 3e-23 >seq1681 Length=1492 Score = 338 bits (374), Expect = 2e-90 Identities = 315/400 (79%), Gaps = 0/400 (0%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 |||||||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 768 GAGGAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTG 827 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||| ||| ||||||||||| | ||||||| || |||||||| |||||| Sbjct 828 TTCGGATTTATTGGGCGTAAAGCGCGCGTAGGCGGACCTGCAAGTCAGATGTGAAATCTC 887 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| || ||||| | ||||||| |||| ||||| | ||||||| ||| | Sbjct 888 GGGGCTCAACCTCGAAACTGCGTCTGAAACTACAGGTCTAGAATCTCGGAGGGGGAAGGG 947 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||| | ||||| ||| |||| ||||||||| | |||||||||| |||||||||| Sbjct 948 GAATATCGCATGTAGGGGTAAAATCCGTAGATATGCGATGGAACACCAGAGGCGAAGGCG 1007 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||||| | |||| ||||||| |||||||||||||| ||||||||||||||| Sbjct 1008 CCTTCCTGGACGAGTATTGACGCTGAGGCGCGAAAGCGTGGGGATCAAACAGGATTAGAT 1067 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||| |||||||||||| ||||| | | || | | | || | Sbjct 1068 ACCCTGGTAGTCCACGCTGTAAACGATGAACACTAGATATTGGAGGATTTGACCCCTTCA 1127 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || ||| ||||| ||||| |||| |||||| |||| Sbjct 1128 GTGTCGTAGCTAACGCGTTAAGTGTTCCGCCTGGGAAGTA 1167 >seq1384 Length=2115 Score = 114 bits (126), Expect = 3e-23 Identities = 126/166 (76%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302 ||||| ||| || ||| | |||| |||| || |||||||||||||| | ||||||| Sbjct 1 AAGGCAGCTCACTAAGCTGGTATTGACGCTGATGCACGAAAGCGTGGGGATCGAACAGGA 60 Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGT 362 |||||||||||||||||||||||| |||||||||| ||| | ||| || | || || Sbjct 61 TTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGTTGGCG---AT-AGA 116 Query 363 GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | | | ||| || || ||||| ||||||||||||||| Sbjct 117 CAGCCAGCGTCCAAGCGAAAGCGTTAAGTTATCCACCTGGGGAGTA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203171772928