Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1719 370 4e-100 seq1404 244 4e-62 seq1384 168 2e-39 >seq1719 Length=1442 Score = 370 bits (410), Expect = 4e-100 Identities = 408/534 (76%), Gaps = 17/534 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTC-GCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| | |||| | || | |||||| ||||||| ||||||||||| Sbjct 706 CGAGTCTTAATAGGGCGCATAGTCAGATGAG-GTAGACGCGAAACCTTGTGATCTACCCT 764 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| ||| |||||| | |||||| ||||||| | || |||||||| Sbjct 765 TGGGCAGGTTGAAGTTGCAGTAACATGTAATGGAGGACCGAACCGATAAACGTTGAAAAG 824 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 || |||||| ||| ||||||||||||||||| || |||||| |||||||||| || || Sbjct 825 TTTCCGGATGACCTGAGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTACT 884 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCA------AGTATCACCATCGGGGGTAGAGC-AC 232 | |||||| | |||||| | || || ||| | | | |||||||| || Sbjct 885 CCCCGAAATGTTTTTAGGAACAGCGTCGGCGTAGAGTTTGATA----GAGGTAGAGCTAC 940 Query 233 TGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCA 292 | | ||| | |||| | | ||||||| | | |||||||||||| |||| Sbjct 941 CGAT-TGGGTGCGGGGGAGTCAAATCCTACCAAATCCAGACGAACTCCGAATGCT-ATCA 998 Query 293 GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC 352 | || | ||| ||||||| ||||||||||||||| | |||||||| ||||| || Sbjct 999 AATATAGC-CGGCAGTGAGGCTTTGGGTGCTAAGGTCCAAGGCCGAGAGGGAAAGAACCC 1057 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 ||| ||||||||||| ||| |||| ||||||| ||||||||| ||| | |||| Sbjct 1058 AGACCATCAGCTAAGGTCCCCAAATTCGTTCTAAGTTGAACTAACGAGGTCCGGTTGCCC 1117 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 1177 Query 473 TAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 |||||||| | |||||||||||||||| |||| || ||| ||||||||| Sbjct 1178 TAGTCGAGCGGCCGGGCGTGGATAATAAACGGGCATCAAGAACGGTACCGAAGC 1231 >seq1404 Length=2053 Score = 244 bits (270), Expect = 4e-62 Identities = 404/566 (71%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||||| ||| || | |||||||||||| ||| ||| |||| Sbjct 1305 CGAGTCTGAATAGGGCGATTAGTAGCATGTCATAGACCCGAAACGGGATGAGCTAGCCAT 1246 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||| | ||||| || | |||||| |||||| | | |||||||| Sbjct 1245 GAACAGGTTGAAGCGGGGGTAATACCTCGTGGAGGACCGAACTCGTGACGGTTGAAAACG 1186 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | ||||||| ||||| |||||||||||||| || |||| | | ||||||||||||| Sbjct 1185 TCTGGGATGATTTGTGGTTAGGGGTGAAAGGCCAATCAAATTCCGTGATAGCTGGTTCTC 1126 Query 181 TCCGAAAACTATTTAGGT--AGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 ||||||| |||||||| || | | | | || |||| ||||||| ||||||| | Sbjct 1125 TCCGAAATGCATTTAGGTGCAGCGTCCGACGAAT-ACCAATGGGGGTATAGCACTGACTT 1067 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 |||||||||| | | | ||||||||||||| ||||||| ||| | | ||| || Sbjct 1066 GGCTAGGGGG-CTTACCAGCTTACCAAACCATATCAAACTCACAATACCATTGAGTACTA 1008 Query 299 CCGCGGGAGTG--AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 || || |||| | ||| || ||||||||||||| | ||| |||| || ||| Sbjct 1007 TCG-GGCAGTGACACGGC--GGATGCTAAGGTCCGTCGTGAAAAGGGAAAGAGCCCAGAC 951 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||| ||| |||| ||||||| | || | || ||| || ||| Sbjct 950 CATCAGCTAAGGTCCCAAAATCGTCGCTAAGTGGA--GAAGGTTGTGGAATTACTTTGAC 893 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | |||||||| |||||| |||||||| | Sbjct 892 ATCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGA 834 Query 477 CGAG-GAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 | || || || ||| || ||| | |||| | |||| ||||||||| ||| || Sbjct 833 CTAGTGATTC-TGCGCCGAAAATGTAACGGGGCTAAAGTGACGTACCGAAGCTATGGAAT 775 Query 535 CATTTATATGATCGGTAGGGGAGCAT 560 || || || || |||||| |||||| Sbjct 774 -ATGTAAAT-ATTGGTAGGAGAGCAT 751 >seq1384 Length=2115 Score = 168 bits (186), Expect = 2e-39 Identities = 150/187 (80%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA--GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| || |||| | | ||||| ||||||| |||||||||||| Sbjct 1929 CGAGTCTGAATAGGGCGCCATAGTCGGTAGTGTTAGACGCGAAACCGTGTGATCTACCCA 1988 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||||||||| || |||||||| |||||||||||||| | | |||||||| Sbjct 1989 TGGGCAGGATGAAGCTGTGGTAACACATAGTGGAGGTCCGAACCGGTTGACGTTGAAAAG 2048 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 2049 TCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGTACT 2108 Query 180 CTCCGAA 186 | ||||| Sbjct 2109 CCCCGAA 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689560361984