Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2057 600 4e-169 seq1901 444 2e-122 seq2205 232 2e-58 >seq2057 Length=1129 Score = 600 bits (664), Expect = 4e-169 Identities = 446/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 770 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 712 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 652 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 651 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 592 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 591 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 532 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 531 CGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 474 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 473 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 414 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 413 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 355 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 354 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 295 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 294 TAATCTTTGAGACAAGCATATGACTACTGGCAG 262 >seq1901 Length=1246 Score = 444 bits (492), Expect = 2e-122 Identities = 381/467 (82%), Gaps = 33/467 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 328 TATTTCTTGTCACTACCTCCCCGAATCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 387 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 388 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTA 447 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||||||||| ||| || ||||||||||||| |||||||||||||| ||| Sbjct 448 CCCGTGACTGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTG 507 Query 223 AATGA---ACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA- 278 ||||| |||| || | || ||| | | ||||||| ||||| |||||| Sbjct 508 AATGATTTACCA----CGTAT-----ACACGCGGTCAGCTAAGTTACTATGATTCACCAT 558 Query 279 AGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGT 338 | || ||| || ||||||||||| | || ||| ||| || Sbjct 559 ATGA--------------TGG--TTAAATCTAATAAATGCTACCATTCTTGCGTCCGGTA 602 Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 ||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 603 TTTGCGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAAT-TTGCACTATCAAA 661 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||||| ||||||| |||||||||||||||||||||||||||||| | | ||||||||| Sbjct 662 TAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTAT--ACTATTTATACTTA 719 Query 459 GACATGCATGGCTTAATCTTTGAGAC-AAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| |||| |||||||||||| ||||||| Sbjct 720 GACATGCATGGCTTAATCTTTAAGACTAAGCATATGACTTCTGGCAG 766 >seq2205 Length=1033 Score = 232 bits (256), Expect = 2e-58 Identities = 172/199 (86%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 ||||||||||| | || ||| ||| || ||| |||||||||||||||||||||| Sbjct 7 ATCTAATAAATGCTACCATTCTTGCGTCCGGTATTTGCGCATGTATTAGCTCTAGAATTA 66 Query 366 CCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 ||||||||||||||||| | | |||||||||||||| ||||||| ||||||||||||| Sbjct 67 CCACGGTTATCCATGTAATTTGC-ACTATCAAATAAACTATAACTGTTTTAATGAGCCAT 125 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 126 TCGCAGTTTCACTGTATACTAT--TTATACTTAGACATGCATGGCTTAATCTTTAAGACA 183 Query 486 AGCATATGACTACTGGCAG 504 ||||||||||| ||||||| Sbjct 184 AGCATATGACTTCTGGCAG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510364566016