Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq390 203 1e-49 seq587 140 1e-30 >seq390 Length=1451 Score = 203 bits (224), Expect = 1e-49 Identities = 220/285 (77%), Gaps = 9/285 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTCAAA 465 ||||||||| |||||||||||||||||||| || ||||||| || |||| | ||| Sbjct 1165 CCCGTCTTGAAACACGGACCAAGGAGTCTACCACAAGTGCGAGTTTTAGGGTTGGAAAAA 1106 Query 466 CCCGTGC--GCGTAATGAAAGTGAACGG--AGGTGGGAACCCGTGAGGGTGCACCATCGA 521 |||| ||| || |||||| | ||||| ||| ||| ||| ||| ||||| Sbjct 1105 CCCGAAACGGCGCAACGAAAGTAGAGTATAAGGTGCGAATCCGCAAGGAGGCAGCATCGG 1046 Query 522 CCGATCCT-GATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 || | ||| ||| | || || || ||||| |||||||| || | ||||||||||| Sbjct 1045 CCAACCCTTGATTTTCTAATGAAGGGATTGAGCAAGAGCATTTTTGGTAGGACCCGAAAG 986 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC-TCTGGTGGAGGCTCGCAGC 638 ||||||||||| || ||| ||||| |||||||| |||||| ||||||||||||||| ||| Sbjct 985 ATGGTGAACTACGCTTGAGTAGGGCGAAGCCAGGGGAAACGTCTGGTGGAGGCTCGAAGC 926 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| ||||||||||| |||||||| ||| || ||||||||| Sbjct 925 GTTACTGACGTGCAAATCGTTCGTCAAACTTGAGTGTAGGGGCGA 881 >seq587 Length=1052 Score = 140 bits (154), Expect = 1e-30 Identities = 125/156 (80%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| ||||||||||| |||||| ||||||||| |||| ||||||||||| Sbjct 381 TTCCAAGAGTCGGGTTGTTTGGGATTGCAGCCTAAAATGGGAGATAAACTTCTTCTAAAG 322 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || ||||||||| ||||||| || ||||||||||||| ||| Sbjct 321 CTAAATATTTATGGGAAACCGATAGCAAACAAGTACTACGAAGGAAAGATGAAAAGAACT 262 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 ||| |||||| ||||||| || |||||| ||||| Sbjct 261 TTGAAAAGAGGGTTAAAA--GACTTGAAATCGTTGA 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983333350