Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq336 426 5e-117 seq488 407 4e-111 >seq336 Length=1668 Score = 426 bits (472), Expect = 5e-117 Identities = 375/463 (81%), Gaps = 26/463 (6%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 315 TATTTCTTGTCACTACCTCCCCGAATCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 374 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 375 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTA 434 Query 163 CCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||| ||||| | | ||||| ||| || |||| ||||||| |||||||||||||| || Sbjct 435 CCCG-TGATAGCAAGGGTAGTCCAATACACTACATTCGAAAGCTGATAGGGCAGAAACTT 493 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||| || | | | | | | || ||| | | |||||| ||||| |||||| | Sbjct 494 GAACGATTTACCAC--GTTTA----CACGCGGTCAGCCAAGTTACTATGATTCACCATG- 546 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341 || || || ||||||||||| | || ||| ||| || ||| Sbjct 547 -----TGATGG---------TTAAATCTAATAAATGCTACCATTCTTGCGTCCGGTATTT 592 Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||||||||||||||||||||||||||||||||||||||| | | |||||| ||||| Sbjct 593 GCGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAAT-GTGCACTATCGAATAA 651 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||||||| |||||||||||||||||||||||||||||| | | |||||||||||| Sbjct 652 ACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTAT--ACTATTTATACTTAGAC 709 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||| |||||||||||||||| ||||||| Sbjct 710 ATGCATGGCTTAATCTTTAAGACAAGCATATGACTTCTGGCAG 752 >seq488 Length=1213 Score = 407 bits (450), Expect = 4e-111 Identities = 368/456 (81%), Gaps = 28/456 (6%) Strand=Plus/Plus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1 GTCACTACCTCCCCGAATCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGT 60 Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 61 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCG-TGA 119 Query 171 TA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAC 229 || | | ||||| ||| || ||||| ||||||| |||||||||||||| ||||| || Sbjct 120 TAGCAAGGGTAGTCCAATACACTACCTTCGAAAGCTGATAGGGCAGAAACTTGAACGATT 179 Query 230 CATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA 289 | | | | | | || ||| | | |||||| ||||| |||||| | || Sbjct 180 TACCAC--GTTTA----CACGCGGTCAGCCAAGTTACTATGATTCACCATG------TGA 227 Query 290 AGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGT 349 || || ||||||||||| | || ||| ||| || ||| |||||| Sbjct 228 TGG---------TTAAATCTAATAAATGCTACCATTCTTGCGTCCGGTATTTGCGCATGT 278 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||||| Sbjct 279 ATTAGCTCTAGAATTACCACGGTTATCCATGTAAT-GTGCACTATCGAATAAACTATAAC 337 Query 410 TGATTTAATGAGCCATTCGCAG-TTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 || ||||||||||||||||||| ||||||||||| | | ||||||||||||||||||| Sbjct 338 TG-TTTAATGAGCCATTCGCAGTTTTCACTGTAT--ACTATTTATACTTAGACATGCATG 394 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| |||||||||| ||||| ||||||| Sbjct 395 GCTTAATCTTTAAGACAAGCATGTGACTTCTGGCAG 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388264192