Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq56 93.3 3e-14 >seq56 Length=254943 Score = 93.3 bits (102), Expect = 3e-14 Identities = 294/453 (65%), Gaps = 2/453 (0%) Strand=Plus/Minus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 ||||| ||||||||||| ||||||| ||||| | | |||||| || || | |||||| Sbjct 216928 TTGCATACAGCTATCTCATCAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTA 216869 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | || || || ||||||| ||||||||| || ||| |||||||| ||||| | | Sbjct 216868 CTTTTAATTGTTCCTAAATTCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAAC 216809 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 || || || || || | || | || || || | ||||| | || | ||| Sbjct 216808 ATATAAGGCAATCCAGTTGATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCC 216749 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 |||| |||| | || | ||| ||| || || || | | | ||| | Sbjct 216748 TTCATTGTACTTCTTCCCATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCT 216689 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || || | || | || | |||||| | | ||| ||||| || | |||||| || Sbjct 216688 TCTCCATAACAATCTTAAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCA 216629 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || | || || | |||||||| |||||| ||||| | | | || | ||| | | Sbjct 216628 TCTTCTTTAACTCTTTACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTT 216569 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAG-GAACTCAAAGATGTCGGC 66441 | | || || ||||| || ||||| || || || | || ||||| | ||||| Sbjct 216568 GTCCTTTATTCTTCAATTCCATGATTCTTACGTAATTAAAGAAAACTC-CATATGTCACT 216510 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 |||||| ||||||| ||| | ||| || || || Sbjct 216509 ATGCCAAGGTTCCAAGTATACGGCAAATGAACC 216477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564235155280