Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq236 226 5e-57 >seq236 Length=1941 Score = 226 bits (250), Expect = 5e-57 Identities = 252/326 (77%), Gaps = 13/326 (4%) Strand=Plus/Minus Query 13 TATGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGA 72 |||| ||||||| |||||| ||| | |||||||| || |||| | | |||||||| Sbjct 1735 TATGCTTAGCGGGTTTTCTTGGCAGCTTGCTTACCTGCGCTATCGCCCCG-CCCGAAGG- 1678 Query 73 CGTTCCATACTGTCAATCTCGACTCTTTCCGT--GGATTTGCCTG--CGGAAATCAACGT 128 | | |||| ||| ||| ||| ||| ||||||||||| |||| || | Sbjct 1677 CTCGGCGTACTTTCAGGTTCGGATCT--CCGGCCGGATTTGCCTGGCCGGA--TCGGCTC 1622 Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 |||||| ||| |||| |||||||||||| |||||| || |||||||||||| || || Sbjct 1621 CTACACCCTTCAACCTACTATTCCGTCAGTAGGCGGCAGTGCCACTCCTGCGTCGCCGCG 1562 Query 189 TCACCCTCAAATGT-AGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCG 246 || | | | || |||||||||||| |||||||||| ||||||| | | ||||| | Sbjct 1561 TCGCTC-CTTGCGTCAGTAACGGAATATTAACCGTTTCGTCCATCGGGTGACTCCGTTAG 1503 Query 247 GCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTC 306 | || ||||| | ||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1502 GATGCCCCTTAGGCCCCGACTCACCCTGATCCGATTAGCGTTGATCAGGAAACCTTAGTC 1443 Query 307 TTTCGGCGAGGGGGTTTCCCACCCCC 332 |||||||| ||||||||||||||||| Sbjct 1442 TTTCGGCGGGGGGGTTTCCCACCCCC 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959994787200