Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq236 286 7e-75 seq209 158 2e-36 >seq236 Length=1941 Score = 286 bits (316), Expect = 7e-75 Identities = 264/329 (80%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 10 CAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTC 69 ||| || ||| ||||||||||||| || | ||||||||||||||||||| | | | Sbjct 634 CAGAGGAGTGCAATAGACCCTGAAACCATGTGCCTACAAGCGGTCGGAGCTGGCTAGCCC 693 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||||||||||||||||||||||| |||||||||| | |||| || || |||||||| Sbjct 694 AGTGACGGCGTGCCTTTTGCATAATGAACCTACGAGTT-GCCGTCGCCGGCAAGGTTAAG 752 Query 130 GGCT-TCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGG 187 || | |||| || |||||||| ||||||||| | ||||||||| ||| | || Sbjct 753 CGCCATGAGGCGCGC-AGCCGAAGCGAAAGCGAGTCCGAACAGGGCGTTTCAGTCAGCGG 811 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 || |||||||||||| ||||||||||| | |||| ||||||| |||||| | || Sbjct 812 CGGCAGACGCGAAACCAAGTGATCTACCCTTGGCCAGGCTGAAGTCTGGGTAACACCAGA 871 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| |||||||| ||| |||||||||| || ||||||| | |||||||||||||| Sbjct 872 TGGAGGGCCGAACCGATAAGCGTTGAAAAGCTTCCGGATGAGCTGAGGGTAGGGGTGAAA 931 Query 308 GGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||| ||||||||| ||| ||||||||||| Sbjct 932 GGCTAATCAAACTTGGAGATAGCTCGTAC 960 >seq209 Length=3312 Score = 158 bits (174), Expect = 2e-36 Identities = 231/324 (71%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| | || || ||||| | || ||||| || | ||| Sbjct 846 AGGGGAGTGAAATAGAACCTGAAACTGCATGCATACAAACAGTGGGAGCGGACTTGTTCC 787 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| || |||||| |||| Sbjct 786 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCTGTAGCGAGCTTAACC 728 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || ||||| |||| |||| || || ||||||| ||||| || Sbjct 727 GAATAGGGG-----AGGCGAAGGGAAACCGAGTCTGAATAGGGCGAT-AGTTGCAGGGTG 674 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||| ||| ||| | |||| ||||| || ||||| | ||| Sbjct 673 TAGACCCGAAACCGGGTGAGCTATCCATGGCCAGGATGAAGGTGCAGTAACATGCACTGG 614 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| || |||| ||| || ||||||| | || |||||||||||||| Sbjct 613 AGGTCCGAACCGACTAATGTTGCAAAATTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 554 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || ||||| ||| |||||| || Sbjct 553 TAAACAAACCCGGAGATAGCTGGT 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972794717696