Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq308 230 1e-57 >seq308 Length=1346 Score = 230 bits (254), Expect = 1e-57 Identities = 222/281 (79%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA-C 466 ||||||||| |||||||||||||||||||| || ||||||| || ||||| ||| | Sbjct 785 CCCGTCTTGAAACACGGACCAAGGAGTCTACCACAAGTGCGAGTTTTAGGGTGGAAAAAC 726 Query 467 CCGTGCGCGTAATGAAAGTGAACGGA-GGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 ||| ||| || |||||||| | |||| ||| |||| ||| ||| ||||| || | Sbjct 725 CCGACGGCGCAACGAAAGTGAGTATAAGGTGCGAATCCGTAAGGAGGCAGCATCGGCCAA 666 Query 526 TCCTGATGTCTTCGGATGGAT---TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | |||| | ||| ||| | ||||| |||||||| || | |||||||||||||| Sbjct 665 CCTTGATTT--TCGAATGAAAGGATTGAGCAAGAGCATTTTTGGTAGGACCCGAAAGATG 608 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||| || ||| ||||| |||||||| ||||||||||||||||||||| |||| | Sbjct 607 GTGAACTACGCTTGAGTAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGAAGCGTTA 548 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| ||| || ||||||||| Sbjct 547 CTGACGTGCAAATCGTTCGTCAAACTTGAGTGTAGGGGCGA 507 Score = 138 bits (152), Expect = 5e-30 Identities = 126/157 (80%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGC-TCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||| | |||||| ||||||||||| |||||| | ||||||||| |||| |||||||||| Sbjct 1201 TTCCAAGAGTCGGGTTGTTTGGGATTGCAGCCTAAAAATGGGAGATAAACTTCTTCTAAA 1142 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||||| || ||||||||| ||||||| || ||||||||||||| || Sbjct 1141 GCTAAATATTTATGGGAAACCGATAGCAAACAAGTACTACGAAGGAAAGATGAAAAGAAC 1082 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||| |||||| ||||||| || |||||| ||||| Sbjct 1081 TTTGAAAAGAGGGTTAAAA--GACTTGAAATCGTTGA 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079988352650