Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq236 104 2e-20 >seq236 Length=1941 Score = 104 bits (114), Expect = 2e-20 Identities = 135/185 (73%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| | || |||||||| |||||||| |||||| |||||||| |||||||||||| ||| Sbjct 129 GGCACATGGGGGATGCCTTGGCTCTCGAAGGCGACGAAGGACGCGATAAGCTGCGATAAG 188 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 || ||| | ||| || | || ||| || | |||||||||||||||||| | Sbjct 189 CTGCGGTAAGGTGCAAATGACCTTCGACCCGCAGGTTTCCGAATGGGGCAACCCGTCA-- 246 Query 121 TTGGAGATA----TATCATAACGC-TAGGCGTTAGGCGAACGTGGGGAACTGAAACATCT 175 || || | | ||| ||| | ||| ||| |||| |||||||||||||||| Sbjct 247 --GGCGAAAAGCCTGTCACGCCGCTTTTGCGGCGGGCTAACGCAGGGAACTGAAACATCT 304 Query 176 AAGTA 180 ||||| Sbjct 305 AAGTA 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476797491883