Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq458 152 7e-35 seq224 147 3e-33 seq236 113 6e-23 >seq458 Length=1041 Score = 152 bits (168), Expect = 7e-35 Identities = 190/256 (74%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| | ||||| || ||| | | || ||| Sbjct 961 CTTAACCTTCCAGCACCGGGCAGGTGTCAGCACCTATACGTCAGCTTTCGCT-TTAGCAG 903 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTC--CCTCTATTCTCTGCGACCACCACCAGCT 118 | |||||||||| | |||||||||||||| ||||| || | | ||| | | ||| Sbjct 902 GCACCTGTGTTTGTGGTAAACAGTCGCTTGGGCCTCTCTTGTGTC--ACCTCTTACTGCT 845 Query 119 CAACACGT------CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 | ||| | ||||| || || |||||| |||||||||||||||| |||| Sbjct 844 CCGGCCGTTTCATGCCTTCACATTCAA-GGTTCCCCTTTTCCCGAAGTTACGGGGACATT 786 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| ||||||||| | ||| |||| | |||||| ||||||| || | | |||| Sbjct 785 TTGCCGAGTTCCTTAACGAGGGTTTTCCCGCGCACCTTAGGATTCTCTCCCCGCCTACCT 726 Query 233 GTGTCGGTTTACGGTA 248 |||||||||||||||| Sbjct 725 GTGTCGGTTTACGGTA 710 >seq224 Length=2112 Score = 147 bits (162), Expect = 3e-33 Identities = 185/248 (75%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 489 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 431 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC--AACAC 124 ||||||||| ||||||||||| || || ||| |||| ||| | | ||| | | | Sbjct 430 GTGTTTTTAATAAACAGTCGCAGCCACCTTTTCACTGCAACCCCTTACTGCTTCGACCGC 371 Query 125 GTCGTTC-AC-CAGCA--GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | || || || || | ||| | ||||||||||||||||||| || | |||||||| Sbjct 370 GAGGGTCTACACATCATCGGGGCGCACCTTCTCCCGAAGTTACGGTGCTAATTTGCCGAG 311 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| ||| ||||| | | | |||||||| || ||| | | ||||| |||||||| Sbjct 310 TTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGTCCACCAGTGTCGGT 251 Query 241 TTACGGTA 248 || ||||| Sbjct 250 TTGCGGTA 243 >seq236 Length=1941 Score = 113 bits (124), Expect = 6e-23 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||| Sbjct 1857 GGCACCCCTTATCCCGAAGTTACGGGGTCATTTTGCCTAATTCCTTAACCGTGATTCACT 1798 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||| ||||||||||| ||| ||| || || |||||| |||| Sbjct 1797 CGAGCGCCTTAGTATACTCAACCCAACTACGTGTGTCCGTTT 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694396347239