Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq224 434 3e-119 seq458 158 3e-36 seq236 77.0 8e-12 >seq224 Length=2112 Score = 434 bits (480), Expect = 3e-119 Identities = 353/421 (84%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||||||||| ||||||| ||| ||||||||| || |||||||| Sbjct 679 CGCGGGGAGATTGCATCTTCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGT 620 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 619 GTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 560 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| || Sbjct 559 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGCTT-GC---- 505 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 504 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 449 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||| ||| | || | ||| Sbjct 448 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCTTTTCACTGCAACC 389 Query 301 GGCATGA--GCTT--ACGGAGCAAGTCCTTCACCCTCACC--GGCGCACCTTCTCCCGAA 354 | | | |||| || | | | | || || | ||| | |||||||||||||||||| Sbjct 388 --CCTTACTGCTTCGACCGCG-AGGGTCTACA-CATCATCGGGGCGCACCTTCTCCCGAA 333 Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414 |||||||||| |||||| ||||||||| || ||||||||||||||||||| | || || Sbjct 332 GTTACGGTGCTAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACT 273 Query 415 C 415 | Sbjct 272 C 272 >seq458 Length=1041 Score = 158 bits (174), Expect = 3e-36 Identities = 225/313 (72%), Gaps = 13/313 (4%) Strand=Plus/Minus Query 116 CTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG 175 |||||||||||||||||| |||||||||||||||||| |||||||| || | ||||||| Sbjct 1041 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCATAGCTTCG 982 Query 176 CGTT--AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 233 || |||||| | | |||||||||| |||||||||||| |||| |||||||| Sbjct 981 GATTGCTCCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGCACCTATACG 922 Query 234 TCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCT------ 287 || |||||| || |||| |||||||| | ||||||||||| ||||| Sbjct 921 TCAGCTTTCGCTTTAGCAGGCACCTGTGTTTGTGGTAAACAGTCGCTTGGGCCTCTCTTG 862 Query 288 GGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTC 347 || | || | || || || || | ||||||| ||| || | |||| Sbjct 861 TGTCACCTCTTACTGCTCCGGC---CGTTTCATG-CCTTCACATTCA-AGGTTCCCCTTT 807 Query 348 TCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTG 407 |||||||||||||| | | ||||||| |||||||| | | ||| || | || |||| Sbjct 806 TCCCGAAGTTACGGGGACATTTTGCCGAGTTCCTTAACGAGGGTTTTCCCGCGCACCTTA 747 Query 408 GTATTCTCTACCC 420 | ||||||| ||| Sbjct 746 GGATTCTCTCCCC 734 >seq236 Length=1941 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | |||| |||||||||||||| | | ||||||||| |||||| || ||| || Sbjct 1857 GGCACCCCTTATCCCGAAGTTACGGGGTCATTTTGCCTAATTCCTTAACCGTGATTCACT 1798 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| |||| ||| ||||||| || Sbjct 1797 CGAGCGCCTTAGTATACTCAACCCAACTAC 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260793153856