Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq458 230 5e-58 seq224 228 2e-57 seq236 114 3e-23 >seq458 Length=1041 Score = 230 bits (254), Expect = 5e-58 Identities = 216/273 (79%), Gaps = 28/273 (10%) Strand=Plus/Minus Query 110 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG 169 ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 1041 CTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCATAGCTTCG 982 Query 170 -ATTGCTC-TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACA 227 ||||||| |||| ||| |||||||||||||||||||||||| |||||| ||||||| Sbjct 981 GATTGCTCCTAACCACTCCTCTTAACCTTCCAGCACCGGGCAGGTGTCAGCACCTATACG 922 Query 228 TCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTAT---- 283 || ||| || ||||||| |||||||||| |||||||||||||||||||||| | Sbjct 921 TCAGCTTTCGCTTTAGCAGGCACCTGTGTTTGTGGTAAACAGTCGCTTGGGCCTCTCTTG 862 Query 284 -------TCT-----CTGCGGCC-TGTCAT------AGA---CAGGCACCCCTTCTCCCT 321 ||| || ||||| | |||| | | ||| |||||| |||| Sbjct 861 TGTCACCTCTTACTGCTCCGGCCGTTTCATGCCTTCACATTCAAGGTTCCCCTTTTCCCG 802 Query 322 AAGTTACGGGGTCATTTTGCCGAGTTCCTTAAC 354 ||||||||||| ||||||||||||||||||||| Sbjct 801 AAGTTACGGGGACATTTTGCCGAGTTCCTTAAC 769 >seq224 Length=2112 Score = 228 bits (252), Expect = 2e-57 Identities = 212/267 (79%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| ||| ||| ||| | |||||| | | ||||||||| |||||| Sbjct 667 GCATCTTCACAAACATTTCAACTTCGCTGAGTCTCTGGAGGAGACAGTGTGGCCATCGTT 608 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 548 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | | | || |||| | | || | Sbjct 547 TAGTTACGGCCGCCGTTTACTGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 497 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 496 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 437 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 436 AGTGCTGTGTTTTTAATAAACAGTCGC 410 >seq236 Length=1941 Score = 114 bits (126), Expect = 3e-23 Identities = 95/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA 299 |||||| | | |||||||||| |||||||| || | |||||||||||||||| | | Sbjct 1922 TTAGCATAGCCATGTGTTTTTGTTAAACAGTTGCCTTCCCCTATTCTCTGCGGCCCGCCG 1863 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAAC 354 || | |||||||||| |||| ||||||||||||||||||||| | ||||||||| Sbjct 1862 AAG-CGGGCACCCCTTATCCCGAAGTTACGGGGTCATTTTGCCTAATTCCTTAAC 1809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062394231168