Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq224 212 1e-52 >seq224 Length=2112 Score = 212 bits (234), Expect = 1e-52 Identities = 227/297 (76%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAACCGGACGACGTATAA 102 ||||||| |||| |||| |||| || | | || || |||||||| | |||||| Sbjct 787 GGAGCCGACGTTGAAATACCACCC-TGATATGTTTGAGGTTCTAACCT----AGGTATAA 841 Query 103 CCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTA 162 | || |||||||| | ||||||||||||||||||||| |||||||||||||| Sbjct 842 CAGTACCGGGGACAGTACATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTA 901 Query 163 ACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCA 222 ||||||| | | ||| || ||| | | || ||||| | || | | ||||||| |||| Sbjct 902 ACGGAGGAGTACGAAGGTAACCTTATCACGGTCGGAAATCGTGAGGAAAGTGCAATGGCA 961 Query 223 AAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGAT 282 ||||| || |||||||||| || |||||| |||||| |||||| || | || |||| Sbjct 962 AAAGGTTGCTTGACTGCGAGACTGACAAGTCGAGCAGGTGCGAAAGCAGGTCATAGTGAT 1021 Query 283 CCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||| |||||||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 1022 CCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCTGGGGATA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982394665568