Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq236 349 1e-93 seq209 306 1e-80 >seq236 Length=1941 Score = 349 bits (386), Expect = 1e-93 Identities = 385/501 (77%), Gaps = 20/501 (4%) Strand=Plus/Minus Query 105 CAGT-GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGA 163 |||| ||||||||| | || || | || |||||||||||||||||||||||||| Sbjct 1018 CAGTAGCTCTACCTGATGCAACTAAAAACAGAGGCTGCACCTAAATGCATTTCGGGGAGT 959 Query 164 ACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTT 223 || ||||||| | |||||||||| |||||||||||||| || ||| |||||| || Sbjct 958 ACGAGCTATCTCCAAGTTTGATTAGCCTTTCACCCCTACCCTCAGCTCATCCGGAAGCTT 899 Query 224 TTCAAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 |||||| || | | ||||||| |||||| ||| |||||| ||||| |||| ||| | Sbjct 898 TTCAACGCTTA-TCGGTTCGGCCCTCCATCTGGTGTTACCCAGACTTCAGCCTGGCCAAG 840 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 | |||||||||| | |||| |||| | ||| | ||||||| |||||||||||| Sbjct 839 GGTAGATCACTTGGTTTCGCGTCTGCCGCCGCTGACTGAAACGCCCTGTTCGGACTCGCT 780 Query 343 TTCGCTACGGCT--ACCCCACACG--GGTTAACCTCGCGACACAACGCAAACTCGCAGGC 398 |||||| ||||| | || || | | ||||||| || | ||| |||||| ||| Sbjct 779 TTCGCTTCGGCTGCGCGCCTCATGGCGCTTAACCTTGC-CGGCGACGGCAACTCGTAGGT 721 Query 399 TCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGAT 458 ||||| | ||||||||||||||||| |||| ||| || |||||||||| | | Sbjct 720 TCATTATGCAAAAGGCACGCCGTCA-CTGG--GCTA----GC----CAGCTCCGACCGCT 672 Query 459 TGTAGGCACATGGTTTCAGGTACTATTTCACTCC-CCGCCAGGGGTACTTTTCACCTTTC 517 |||||||||||||||||||| ||||| |||||| | | | | ||| ||||||||||||| Sbjct 671 TGTAGGCACATGGTTTCAGGGTCTATTGCACTCCTCTGTCCGAGGTTCTTTTCACCTTTC 612 Query 518 CCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||||||||||| |||| ||||||||| | |||||||||| |||| ||| ||||||| Sbjct 611 CCTCACGGTACTGGTCCACTATCGGTCTCTCGAGAGTATTTAGCCTTACCGGATGGTCCC 552 Query 578 GCCAGATTCACACGAAATTTC 598 | ||||||||| | | ||||| Sbjct 551 GGCAGATTCACGCAAGATTTC 531 >seq209 Length=3312 Score = 306 bits (338), Expect = 1e-80 Identities = 378/505 (75%), Gaps = 24/505 (5%) Strand=Plus/Plus Query 91 CCCCCTAGACCATC-CAGTGCTCTACCTCCGGGAAG----AAACACGCGACGCTGCACCT 145 |||||||| |||| |||||||||||| || |||| || |||| | | || |||| Sbjct 456 CCCCCTAG-CCATAACAGTGCTCTACC-CCAAGAAGTCTTAACCACGAGGCACT--ACCT 511 Query 146 AAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCA 205 |||| ||||| ||||||||||||||| | ||||| || |||||||||||||||||| Sbjct 512 AAATAGTTTTCGAGGAGAACCAGCTATCTCCGGGTTTGTTTAGCCTTTCACCCCTATCCA 571 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGC 265 ||| |||||| || | ||| |||| | ||| ||||||| |||||| | |||| Sbjct 572 CAGCTCATCCGCTAATTTTGCAACATTAGTCGGTTCGGACCTCCAGTGCATGTTACTGCA 631 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||| |||| |||||||||| |||| | ||||||||| | | ||| ||| || || Sbjct 632 CCTTCATCCTGGCCATGGATAGCTCACCCGGTTTCGGGTCTACACCCTGCAACT-AT-CG 689 Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACG 385 |||||||| |||||| |||| || || || ||| | ||| |||| ||||| ||| || | Sbjct 690 CCCTATTCAGACTCGGTTTCCCTTCGCCTCCCCTATTCGG-TTAAGCTCGCTACAGAATG 748 Query 386 CAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC 445 || |||| | | |||| | ||||||| |||| ||||| || || ||| || Sbjct 749 TAAG-TCGCTGACCCATTATACAAAAGGTACGCAGTCAC--GGAAC----AAG-----TC 796 Query 446 AGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTAC 505 ||||| || | ||||| ||| ||||||||| |||||||||||||| || ||||| | Sbjct 797 CGCTCCCACTGTTTGTATGCATGCAGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTC 856 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||| |||||||||||||||||| || | ||||||||| | |||||||||| ||| Sbjct 857 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTG 916 Query 566 ACGGGTGGTCCCGCCAGATTCACAC 590 || ||||||| ||| |||| || Sbjct 917 GAGGATGGTCCCCCCATGTTCAGAC 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817590130432