Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq209 403 4e-110 seq236 208 2e-51 >seq209 Length=3312 Score = 403 bits (446), Expect = 4e-110 Identities = 348/415 (84%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| ||||||| |||| |||| |||||||||||| |||||||| Sbjct 564 CCTATCCACAGCTCAT-CCGCTAA-TTTTGCAACATTAGTCGGTTCGGACCTCCAGTGCA 621 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| |||||| || |||||||| |||||||| | Sbjct 622 T-GTTACTGCACCTT-CATCCTGGCCAT-GGATAGCTCACCCGGTTT-CGGGTCTACA-C 676 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 || || |||| ||||||| | ||||||| ||| | || ||||||||||||||||||||| Sbjct 677 CCTGCAACTAT-CGCCCTATTCAGACTCGGTTTCC-CTTCGCCTCCCCTATTCGGTTAAG 734 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || || || ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 735 CTC-GCTACAGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGAACAA 793 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || |||||||||| ||||| |||| | |||||||| ||||||||||||||||| |||| Sbjct 794 -GTCCGCTCCCACTGTTTGTATGCATGCAGTTTCAGGTTCTATTTCACTCCCCTC-CCGG 851 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 852 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAG 911 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| || | |||| ||| |||||| Sbjct 912 CCTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTCCACGTGTCCCGCCCTACT 966 >seq236 Length=1941 Score = 208 bits (230), Expect = 2e-51 Identities = 293/397 (74%), Gaps = 16/397 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| | ||||||||| |||||| | || |||||||| ||| || |||| || Sbjct 900 TTTTCAACGCTTATCGGTTCGGCCCTCCATCTGGT-GTTACCCAGACTT-CAGCCTGGCC 843 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC-GACT-AGACGCCCTAGTAAG 147 | ||| |||||| | ||||| || |||| || || |||| | ||||||| | | Sbjct 842 A-AGGGTAGATCACTTGGTTT-CGCGTCTGCCGCC--GCTGACTGAAACGCCCTGTTCGG 787 Query 148 ACTCGCTTTTCGCTACGCCTCC---CCTATT--CGGTTAAGCTTTGCCACTGAAAATAAG 202 ||||||||| |||| || || | ||| | || |||| ||| ||| || || Sbjct 786 ACTCGCTTT-CGCTTCGGCTGCGCGCCTCATGGCGCTTAACCTT-GCCGGCGACGGCAAC 729 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTG 262 ||| | |||||| ||||||| |||| ||||| | | | ||||| || ||||| Sbjct 728 TCGTAGGTTCATTATGCAAAAGGCACGCCGTCACTGGGCTA-GCCAGCTCCGACCGCTTG 670 Query 263 TACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCC 322 || ||| | ||||||||| |||||| |||||| || |||| |||||||||| |||||||| Sbjct 669 TAGGCACATGGTTTCAGGGTCTATTGCACTCCTCTGTCCGAGGTTCTTTTCACCTTTCCC 610 Query 323 TCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 |||||||||| || ||||||||||| || ||||||||||||| |||||||||| Sbjct 609 TCACGGTACTGGTCCACTATCGGTCTCTCGAGAGTATTTAGCCTTACCGGATGGTCCCGG 550 Query 383 CATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||||| ||| ||||||||| ||| |||||| Sbjct 549 CAGATTCACGCAAGATTTCTCGTGTCCCGCGCTACTC 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241593258112