Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq458 221 3e-55 seq209 168 2e-39 seq236 96.9 8e-18 >seq458 Length=1041 Score = 221 bits (244), Expect = 3e-55 Identities = 298/404 (74%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||| | || |||||| |||||| ||||||| |||| | | ||| | | | | Sbjct 478 CGCCTACGCTTTTCCGCCTCGGCTTAGGTCCCGACTTACCCTGAGTCGACGATCGTTGCT 419 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||| | |||| |||| |||||| |||| ||| |||||||||| || Sbjct 418 CAGGAACCCTTAGGCTTTCGGTGGACAGGATTCTCACCTGTCTTTTCGCTACTCATACCG 359 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCA--GCTTCACCACTGACAC 177 |||||||||| | | ||||| | || ||| | ||||| | | || | Sbjct 358 ACATTCTCACTTCTTACCAGTCCACGGATCCTTC---CGGTACCGCTTCTACCC-GATAA 303 Query 178 GA-CGCTCCCCTACCCAACCACACAGG-TTGCCACAGCTTCGGCGGATAACTTAAGCCCC 235 || ||||||||||||||| || |||||| |||||||| ||| |||||| Sbjct 302 GAACGCTCCCCTACCCAAGTCGTTAGACTTGCCATAGCTTCGGTTCCGTGCTTTAGCCCC 243 Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATG 295 | |||| ||||||| ||| | || |||||||||||||||||||||||||| || | || Sbjct 242 GG-ACATCTTCGGCGCAGAACCTCTCGACCAGTGAGCTATTACGCACTCTTTAAATGGTG 184 Query 296 GCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTC 355 |||||||| |||||||| |||||||||| | | | ||||||||||| ||||| || | Sbjct 183 GCTGCTTCTAAGCCAACATCCTGGTTGTTTCTGAAGTTCCACATCCTTCTCCACTTAG-C 125 Query 356 ACCAC-TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | || ||| |||||||||||| |||||||||||||||||| Sbjct 124 ACGGCATTTGGGACCTTAGCTGATGGTCTGGGCTGTTTCCCTCT 81 >seq209 Length=3312 Score = 168 bits (186), Expect = 2e-39 Identities = 251/345 (73%), Gaps = 11/345 (3%) Strand=Plus/Plus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 |||| ||||||| |||||| |||| || |||||| | |||||||||||| | || Sbjct 29 GGAAACCTTGGACTTTCGGCGAGCGGGCTTTTCACCCGCTTTAACGCTACTCATGTCAGC 88 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || || || | | || ||||| | ||| | Sbjct 89 ATTCGCACTTCTGAT-ACCTCCAGCA-ACCTTCTCAAGTCACCTTCATTGGCCTACAGAA 146 Query 180 CGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCCCG 236 |||||| ||||| | || | ||| || ||||||||| || | || ||||||| Sbjct 147 CGCTCCTCTACCATAGAACCTAAGTTCTATCCGCAGCTTCGGTT-ATCAATTTAGCCCCG 205 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 ||||| || |||| | | ||||||| ||||||||||||||| ||||| || ||||| Sbjct 206 TTACATCTTCCGCGCAGGACGACTTGACTAGTGAGCTATTACGCTTTCTTTAAATGATGG 265 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC-TGAGTC 355 ||||||| |||||||| |||| | |||||| || ||||||| ||| |||| | | | Sbjct 266 CTGCTTCTAAGCCAACATCCTAGCTGTCTATGCCTTCCCACATCGTTTACCACTTAATTG 325 Query 356 ACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || || ||| ||||||||| | |||||| ||||||||| ||| Sbjct 326 ATCA-TTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTTTCG 369 >seq236 Length=1941 Score = 96.9 bits (106), Expect = 8e-18 Identities = 264/391 (68%), Gaps = 25/391 (6%) Strand=Plus/Minus Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCTGGAACCCTTGGATAATCG 80 ||||||| |||||||||||| | | || | | |||| | |||| |||| | ||| Sbjct 1496 CCTTAGGCCCCGACTCACCCTGATCCGATTAGCGTTGATCA-GGAAACCTTAGTCTTTCG 1438 Query 81 GCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTCTCACTCGCATCAAC 139 |||| ||| ||||||||| | | || ||||||| ||| |||| | | || | Sbjct 1437 GCGGGGGGGTTTCCCACCCCCCTTATCGTTACTCATACCTACATTTGCTTTTCCAGAGGC 1378 Query 140 TCCACCACACAGTCA--CCCGGCAGCTTCACCACTGACACGACGCTCCCCTACCCA-ACC 196 |||| | | ||| ||| || |||| | | | | ||||||||||| | | | Sbjct 1377 TCCAGAAGGGA-TCAATCCCCGC--CTTCGACGCCGCTGGAATGCTCCCCTACCGATATC 1321 Query 197 ACACAGGTTGCCACAGCTTCGGCGGATAAC----TTAAGCCCCGCTACATTATCGGCGCG 252 | | | | |||| ||||||| |||| ||| |||| || ||||| ||| Sbjct 1320 AAATA---TCCCACGGCTTCGG----TAACATGCTTATGCCCGATTA--TTATCCACGCC 1270 Query 253 GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAA 311 | | || ||| |||||||| ||||||||||||| || || |||||||||||||||||| Sbjct 1269 AGACCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAA 1210 Query 312 CCTCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCC 369 | |||| | |||| ||| | || || || | | |||||| | || ||| || Sbjct 1209 CATCCTAGCTGTCCGTGCAGTCCGACTTCGTTAATGCAACTGAGCATGTATTTGGGGACC 1150 Query 370 TTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| | || || ||| |||| |||||||| Sbjct 1149 TTAGCCGGTGGTCCGGGTTGTTGCCCTCTCG 1119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177593605632