Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq209 208 1e-51 >seq209 Length=3312 Score = 208 bits (230), Expect = 1e-51 Identities = 220/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | |||||||||| |||| |||||||||| |||||| Sbjct 2840 CCCACGCTTTCGTGCATGAGCGTCAGTTTTATCCCAGGGGGTTGCCTTCGCCATTGGTGT 2899 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| |||||||| ||||| || Sbjct 2900 TCCTCCAAATCTCTACGCATTTCACTGCTACACTTGGAATTCCACCCCCCTCTGACAAAC 2959 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || ||| | |||| | ||| || |||||||||| | |||||| ||| ||| Sbjct 2960 TCTAGATACGCAGTCTTAAAAGCCATTCCCAGGTTGAGCCCGGGGATTTCACTTCTAACT 3019 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | | |||||| | | | |||||| |||| ||| |||| |||||||||| |||||| Sbjct 3020 TACATATCCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACG 3079 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 3080 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 3129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828795640253