Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq224 282 7e-74 >seq224 Length=2112 Score = 282 bits (312), Expect = 7e-74 Identities = 218/259 (84%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| |||||| ||||| |||||| |||||||| ||| || |||| |||| Sbjct 1387 CTTAGATGCTTTCAGCGGTTATCTCTTCCACACTTAGCTACCCGGCGATGCGACTGGCGT 1328 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| ||| |||||||||| |||||| ||||||||||||||||| | |||| || | Sbjct 1327 CACAACCGGTACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCC 1268 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||||| ||| ||||||||| | |||||||||| ||||||||| ||||||| | |||||| Sbjct 1267 TCAAATCTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCCA 1208 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||| ||| ||||||||| ||||||||||| |||||||||||| ||| |||||||||| Sbjct 1207 GCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGACTACAGCCCCAGG 1148 Query 257 ATGAGACGAGCCGACATCG 275 |||||| |||||||||||| Sbjct 1147 ATGAGATGAGCCGACATCG 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780795892748