Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq209 253 6e-65 >seq209 Length=3312 Score = 253 bits (280), Expect = 6e-65 Identities = 224/285 (79%), Gaps = 26/285 (9%) Strand=Plus/Minus Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAA 289 |||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 3310 GATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAA 3251 Query 290 TATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGG 349 | ||| |||||||| || |||||| |||||||||||||||| || ||||||||| || Sbjct 3250 TTTTGGACAATGGGGGCAACCCTGATCCAGCAACGCCGCGTGAATGAAGAAGGCCTTAGG 3191 Query 350 GTCGTAAAGCTCTGTCCTCAAGGAAGATAA-------------------------TGACG 384 || |||||| ||| | ||| |||||| || ||||| Sbjct 3190 GTTGTAAAGTTCTTTTGTCAGGGAAGAAAAGGCTTGTGCTAATATCACAAGCTGCTGACG 3131 Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 3130 GTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 3071 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | ||||||| |||||||||| |||||||||| ||||| ||| || Sbjct 3070 CAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGG 3027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497591868032