Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq209 446 6e-123 seq236 417 3e-114 seq458 100 1e-18 >seq209 Length=3312 Score = 446 bits (494), Expect = 6e-123 Identities = 403/497 (81%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| ||| ||||||| ||| || |||||||||||||||||| |||| ||| ||||| Sbjct 704 CGAGTCTGAATAGGGCGATAGTTGCAGGGTGTAGACCCGAAACCGGGTGAGCTATCCATG 645 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||||||||| |||||| || ||||||||||||||| |||||||||| |||||| Sbjct 644 GCCAGGATGAAGGTGCAGTAACATGCACTGGAGGTCCGAACCGACTAATGTTGCAAAATT 585 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| Sbjct 584 AGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCCGGAGATAGCTGGTTCTCC 525 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAG--TATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||||||||||||||||||||| | || || ||||||||||||||||||| Sbjct 524 TCGAAAACTATTTAGGTAGTGCCTCGTGGTTAAGACTTCTTGGGGTAGAGCACTGTTATG 465 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 |||||||||| ||||| ||||||||| |||| ||||||||||||| || ||| || Sbjct 464 GCTAGGGGGTTATTGCAACTTACCAACCCATGGCAAACTCCGAATACGAGAAAGTCATA- 406 Query 300 CGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| | | ||| |||||||| ||| | ||| ||| || || || ||| Sbjct 405 CACGGGAGACA-GACATCTGGTGCTAACGTCAGGTGTCGAAAGGGAAACAACCCAGACCG 347 Query 359 TCAGCTAAGGCCCCGAAATGA-CAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| |||||| || ||||| | ||||| || || || ||||| Sbjct 346 CCAGCTAAGGTCCC-AAATGATCAATTAAGTGGTA--AACGATGTGGGAAGGCATAGACA 290 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||||| Sbjct 289 GCTAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTAGTC 231 Query 478 GAGGAGTCGGGCGTGGA 494 || ||| ||| ||| Sbjct 230 AAGTCGTCCTGCGCGGA 214 >seq236 Length=1941 Score = 417 bits (462), Expect = 3e-114 Identities = 438/566 (77%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||||||||| ||||| || | |||| |||||||||||||||||||| Sbjct 782 CGAGTCCGAACAGGGCGTTTCAGTCAGCGGCGGCAGACGCGAAACCAAGTGATCTACCCT 841 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||||| |||||| ||||||| | | |||||||| Sbjct 842 TGGCCAGGCTGAAGTCTGGGTAACACCAGATGGAGGGCCGAACCGATAAGCGTTGAAAAG 901 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||| |||||||||||||||||||| |||||||||| |||||| || || Sbjct 902 CTTCCGGATGAGCTGAGGGTAGGGGTGAAAGGCTAATCAAACTTGGAGATAGCTCGTACT 961 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC---CATCGGGGGTAGAGC-ACTGT 235 | |||||| |||||||| ||||| | | | |||| || |||||| |||| Sbjct 962 CCCCGAAATGCATTTAGGTGCAGCCTCTGTTTTTAGTTGCATCAGG--TAGAGCTACTGA 1019 Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | ||| | | || | | | | || ||| | ||||||||||||| | | || Sbjct 1020 T-TGGATGCGAGGGCTTCACCGCCTATCAAGTCCAGACAAACTCCGAATGGGTGCAACTT 1078 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | |||||||||||| ||||||||||||||| | |||||||| || || ||||| Sbjct 1079 CCATGCAGGGAGTGAGGGCGCGGGTGCTAAGGTCCGCGTCCGAGAGGGCAACAACCCGGA 1138 Query 356 CTATCAGCTAAGGCCCCGAAATGACA-GCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | | | ||||||| ||| |||| ||| ||| |||| | |||||||||| || ||| | Sbjct 1139 CCACCGGCTAAGGTCCCCAAAT-ACATGCTCAGTTGCATTAACGAAGTCGGACTGCACGG 1197 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 1257 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 |||||| ||| ||||||||||||||||||| || | ||| ||||||||| ||||||| Sbjct 1258 GTCGAGCGGTCTGGCGTGGATAATAATCGGGCATAAGCATGT-TACCGAAGCCGTGGGAT 1316 Query 535 CATTTATATGATCGGTAGGGGAGCAT 560 || || |||||||||||||||| Sbjct 1317 ATTTGAT---ATCGGTAGGGGAGCAT 1339 >seq458 Length=1041 Score = 100 bits (110), Expect = 1e-18 Identities = 123/163 (75%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 319 GTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATG 378 ||| |||| ||||| | ||||| || | || ||| ||||||||||| ||| ||||| Sbjct 62 GTGATAAGATCCGTAGTCAAGAGGGAAACAGCCCAGACCATCAGCTAAGGTCCC-AAATG 120 Query 379 ACA-GCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAA 437 | ||||||| | || || || | | | | ||| | ||||||||||||| ||| Sbjct 121 CCGTGCTAAGTGGAG--AAGGATGTGGAACTTCAGAAACAACCAGGATGTTGGCTTAGAA 178 Query 438 GCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||||| |||||||||||||||||| |||||||| |||||| Sbjct 179 GCAGCCAC-CATTTAAAGAGTGCGTAATAGCTCACTGGTCGAG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689590825472