Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq209 246 6e-63 seq236 136 7e-30 >seq209 Length=3312 Score = 246 bits (272), Expect = 6e-63 Identities = 206/252 (82%), Gaps = 18/252 (7%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1307 AGTGCATGTGGTGGATGCCTAGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 1248 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||||||| ||||||| || | ||||| |||||||||||||||||||||| | Sbjct 1247 AGCATGGGGGAGTCGGCAAACAGACATCGATCCCATGATTTCCGAATGGGGAAACCCGAC 1188 Query 121 C--CTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAA 178 | | | ||||| | ||||| | | ||||||||||| |||||||| Sbjct 1187 CAGCAAT-GGTCACT-----CTGAAAA----------GAGAGCGAACGCGGAGAACTGAA 1144 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1143 ACATCTAAGTACCCGTAGGAAAAGAAATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAA 1084 Query 239 ATGGGATGAGCC 250 || ||| ||||| Sbjct 1083 ATCGGAGGAGCC 1072 >seq236 Length=1941 Score = 136 bits (150), Expect = 7e-30 Identities = 182/250 (73%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||||||| |||||||||||| | |||||| |||||||| || ||||||| Sbjct 127 AGGGCACATGGGGGATGCCTTGGCTCTCGAAGGCGACGAAGGACGCGATAAGCTGCGATA 186 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||| || | ||||| ||| || |||||| ||||||||||||| |||||| | Sbjct 187 AGCTGCGGTAAG-GTGCAAATGACCTTCGACCCGCAGGTTTCCGAATGGGGCAACCCGTC 245 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 || | || || | | | | | || ||||| | |||||||||| Sbjct 246 A----GGCGAAAAGCCTG-TCACGCCGCTTTTGCGGCGGGCTAACGCAGGGAACTGAAAC 300 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 ||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 301 ATCTAAGTACCTGCAGGAAAAGAAAATAACAATGATTCCCTTAGTAGTGGCGAGCGAAAC 360 Query 241 GGGATGAGCC 250 |||| |||| Sbjct 361 GGGAATAGCC 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918395013088