Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq224 300 5e-79 >seq224 Length=2112 Score = 300 bits (332), Expect = 5e-79 Identities = 407/564 (72%), Gaps = 24/564 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||||||||| |||| ||| || |||| || | |||| || Sbjct 994 TCGACTTGTCAGTCTCGCAGTCAAGCAACCTTTTGCCATTGCACTTTCCTCACGATTTCC 935 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | | ||| ||||| | | |||||||||| ||||||||| | ||||||||| Sbjct 934 GACCGTGATAAGGTTACCTTCGTACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 876 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| || |||| | ||||||||| | | | || || |||||||| || Sbjct 875 TCAAACTGCCTACCATGTACTGTCCCCGGTACTGTT-ATA--CCTAGGTTAGAACCTCAA 819 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 |||| ||||||||||||| || ||||| |||||||| | | ||| || Sbjct 818 ACATATCAGGGTGGTATTTCAACGTCGGCTCCATTGTGACTAGCGTCACAACTTCAAAGC 759 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||||||||||| | | || ||||| | ||||| ||| ||||| | Sbjct 758 CTCCCACCTATCCTACACAGATATGGTCAAAGTCCAATGCAAAGCTGCAGTAAAGGTGCA 699 Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||||| | | ||||||| || | | ||| ||| | | Sbjct 698 TGGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCTTCACAAACATTTCAACTTCGCTG 639 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || ||| ||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 638 AGTCTCTGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTACCC 579 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| Sbjct 578 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTC 519 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| | | || ||| ||| ||| |||| |||||||||||| Sbjct 518 AATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGCACCG 478 Query 540 GGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| || ||||| || Sbjct 477 GGCAGGCGTCACACCCTATACGTC 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702390755968