Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5658 100 1e-18 seq2990 100 1e-18 seq3351 95.1 5e-17 seq2247 95.1 5e-17 seq1683 95.1 5e-17 seq1073 95.1 5e-17 seq6322 80.6 1e-12 >seq5658 Length=1106 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 3 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 62 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 63 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 122 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 123 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 161 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 612 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 671 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 672 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 731 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 732 ATCACGTTTAGGGGCGA 748 >seq2990 Length=2017 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 1363 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 1422 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1423 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1482 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 1483 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 1521 >seq3351 Length=3059 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 2237 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 2296 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 2297 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 2356 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 2357 AATGAGATTTAAATAATACCTGAAATCGTTAAGATGGAA 2395 >seq2247 Length=4204 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 885 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 826 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 825 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 766 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 765 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 727 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 230 TTGAGTAAGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 171 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 170 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 111 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 110 ATCACGTTTAGGGGCGA 94 >seq1683 Length=606 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 524 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 465 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 464 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 405 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 404 AATGAGATTTAAATAATACCTGAAATCGTTAAGATGGAA 366 >seq1073 Length=1498 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 476 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 535 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 536 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 595 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 596 AATGAGATTTAAATAATACCTGAAATCGTTAAGATGGAA 634 >seq6322 Length=1062 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 605 TTGAGTAAGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 664 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 665 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 724 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 725 ATCACGTTTAGGGGCGA 741 Score = 75.2 bits (82), Expect = 5e-11 Identities = 82/108 (76%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-A 148 ||||||||||||| | || |||||||| ||||||| |||| ||||||||||| | Sbjct 1 AAAGCTAAATATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATA 60 Query 149 GCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | ||| |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 61 GTACTCAGGAATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079839575450