Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1590 91.5 4e-16 seq4742 75.2 3e-11 >seq1590 Length=2387 Score = 91.5 bits (100), Expect = 4e-16 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 417 ATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATACTTAGACATGCATGGCTTAA 474 ||||||| ||||||| | ||| | || || ||| ||||||| || |||||||||||| Sbjct 2387 ATGAGCCGCTCGCAGTATT-CTGCAATAAATGTGCATATACTTTCACTTGCATGGCTTAA 2329 Query 475 TCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||| Sbjct 2328 TCTTTGAGACAAGCATATGACTACTGGCA 2300 >seq4742 Length=1812 Score = 75.2 bits (82), Expect = 3e-11 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 4 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510287037184