Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq12 116 7e-24 seq11 102 1e-19 seq10 102 1e-19 >seq12 Length=816096 Score = 116 bits (128), Expect = 7e-24 Identities = 187/267 (70%), Gaps = 29/267 (11%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || ||| | || |||| Sbjct 27298 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCGTTTTCGCGTTTGAATA 27357 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG---------GTTCTATTTTGTTGGTTTC 172 | ||||||||||||| | ||| | || | ||||| |||| || ||| Sbjct 27358 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTTTTGTTCTTTTTTCTTATTTT- 27416 Query 173 TAGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAG 231 || | || | |||||||||| ||| | ||||| | ||||||| |||||||| Sbjct 27417 --GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAG 27472 Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||| ||||| || |||| ||| ||||||||||| || || | || || Sbjct 27473 GTGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTC 27532 Query 292 CATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||||||| ||| Sbjct 27533 CATTAATCA-AGAACGAAAGTTAAGGG 27558 >seq11 Length=923120 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 862210 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 862269 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 862270 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 862328 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 862329 AAGTTAAGGG 862338 >seq10 Length=919979 Score = 102 bits (112), Expect = 1e-19 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | ||||| | ||||||| ||||||||||||||||||| ||||| Sbjct 770391 TTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGATTT 770450 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 770451 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 770509 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 770510 AAGTTAAGGG 770519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195625344