Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12 100 1e-18 seq119 95.1 5e-17 seq11 95.1 5e-17 seq10 95.1 5e-17 seq4 80.6 1e-12 >seq12 Length=816096 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 29652 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 29711 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 29712 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 29771 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 29772 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 29810 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 30261 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 30320 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 30321 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 30380 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 30381 ATCACGTTTAGGGGCGA 30397 >seq119 Length=562 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 491 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 432 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 431 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 372 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 371 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 333 >seq11 Length=923120 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 867143 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 867202 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 867203 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 867262 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 867263 AATGAGGTTTAAATAGTACCTGAAATCGTTAAGATGGAA 867301 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 867798 TTGAGTAAGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 867857 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 867858 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 867917 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 867918 ATCACGTTTAGGGGCGA 867934 >seq10 Length=919979 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 774201 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 774260 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 774261 TATTTGTAGGAAACCGATAGTATACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 774320 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 774321 AATGAGATTTAAATAATACCTGAAATCGTTAAGATGGAA 774359 >seq4 Length=1767061 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 1707401 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 1707460 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 1707461 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 1707520 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 1707521 ATCACGTTTAGGGGCGA 1707537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079989746900