Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq73 152 8e-35 seq12 152 8e-35 seq11 152 8e-35 seq10 152 8e-35 >seq73 Length=552 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 271 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 330 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 331 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 389 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 15 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 74 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 75 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 115 >seq12 Length=816096 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 27951 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 27892 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 27891 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 27833 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 28207 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 28148 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 28147 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 28107 >seq11 Length=923120 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 862737 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 862678 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 862677 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 862619 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 862993 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 862934 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 862933 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 862893 >seq10 Length=919979 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 770918 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 770859 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 770858 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 770800 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 771173 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 771114 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 771113 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 771073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796310318