Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq12 113 9e-23 seq11 111 3e-22 seq10 111 3e-22 seq73 93.3 8e-17 >seq12 Length=816096 Score = 113 bits (124), Expect = 9e-23 Identities = 103/129 (80%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 201 AAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 || || | ||||||||| | || | | ||||| |||||||||| |||||||||||| Sbjct 28288 AAAGTGTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTA 28347 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||| ||||||||||||||||||||| | ||||||| | | ||| |||||||||| Sbjct 28348 ATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTG 28407 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 28408 CCCTTTGTA 28416 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 28107 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 28166 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 28167 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 28207 >seq11 Length=923120 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 863089 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 863148 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 863149 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 863208 Query 328 A 328 | Sbjct 863209 A 863209 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 862893 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 862952 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 862953 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 862993 >seq10 Length=919979 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 771269 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 771328 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 771329 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 771388 Query 328 A 328 | Sbjct 771389 A 771389 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 771073 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 771132 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 771133 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 771173 >seq73 Length=552 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 115 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 56 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 55 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195472384