Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 471 1e-130 seq367 466 6e-129 seq11 466 6e-129 seq4 462 7e-128 >seq10 Length=919979 Score = 471 bits (522), Expect = 1e-130 Identities = 325/367 (89%), Gaps = 13/367 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||| |||| |||||| | Sbjct 776900 TAAGTAAAACAACATTAAAAGTAGTGGTATTTCA-TTGCCGCGAAACTGTATACGTTCTG 776842 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 776841 CTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 776782 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 776781 CAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 776722 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776721 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 776662 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 776661 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGA 776602 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| ||||||||||| ||||||||||||||||||| ||| || || | || Sbjct 776601 TTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATACCA 776542 Query 537 CTTTCTG 543 |||||| Sbjct 776541 -TTTCTG 776536 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 777126 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 777067 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||| ||||| ||||| Sbjct 777066 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCTGACTATGTC 777020 >seq367 Length=1022 Score = 466 bits (516), Expect = 6e-129 Identities = 324/369 (88%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 371 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 312 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 311 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 252 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 251 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 192 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 132 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 131 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 72 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| ||||||||||| ||||||||||||||||||| ||| || || | Sbjct 71 GATTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATAC 12 Query 535 CACTTTCTG 543 || |||||| Sbjct 11 CA-TTTCTG 4 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 591 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 532 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 531 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 485 >seq11 Length=923120 Score = 466 bits (516), Expect = 6e-129 Identities = 324/369 (88%), Gaps = 14/369 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 869820 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 869761 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 869760 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 869701 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 869700 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 869641 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869640 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 869581 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 869580 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 869521 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| ||||||||||| ||||||||||||||||||| ||| || || | Sbjct 869520 GATTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATAC 869461 Query 535 CACTTTCTG 543 || |||||| Sbjct 869460 CA-TTTCTG 869453 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 870040 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 869981 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 869980 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 869934 >seq4 Length=1767061 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 1709352 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 1709293 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1709292 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 1709233 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1709232 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1709173 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1709172 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1709113 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1709112 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1709053 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 1709052 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 1708993 Query 535 CACTT 539 || || Sbjct 1708992 CATTT 1708988 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1709572 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1709513 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1709512 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1709466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192183744