Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11 260 4e-67 seq101 219 1e-54 seq12 219 1e-54 >seq11 Length=923120 Score = 260 bits (288), Expect = 4e-67 Identities = 369/506 (73%), Gaps = 17/506 (3%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 861819 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 861760 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 861759 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 861700 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 861699 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 861640 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA- 242 || || |||| |||| |||| ||||||| |||||| | || ||| || | | | | | Sbjct 861639 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACA-CACTGAATAAT 861581 Query 243 -AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTT 301 | ||| | | | | || |||| ||| || | | | | || Sbjct 861580 TATATTATGTG--TTGCTTCTTTGTTAT-AAT-TCCTTTAATATCATTTTTTCTTAGGGG 861525 Query 302 TTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 | ||| | |||| ||||| ||| | ||| || ||| || ||||||||| | Sbjct 861524 TCTTAACAAATACATACAATTACTCCGGGGAGTAAAAGTACTTAACAAGTATTAGCTACA 861465 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 | || || ||||||| | || ||| | | |||| || | ||||||| ||||||| Sbjct 861464 GCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGATTATAACTGTTTTAATG 861408 Query 420 AGCCATTCGCAGTTTCACTG-TATAGAT-TGCTTATACTTAGACATGCATGGCTTAATCT 477 |||| |||||||||| ||| ||| || ||| ||||||| || ||||||||||||||| Sbjct 861407 AGCCGTTCGCAGTTT--CTGCAATAAATGTGCATATACTTTCACTTGCATGGCTTAATCT 861350 Query 478 TTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||| Sbjct 861349 TTGAGACAAGCATATGACTACTGGCA 861324 >seq101 Length=821 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 445 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 504 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 505 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 564 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 565 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 623 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 624 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 668 >seq12 Length=816096 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 27043 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 26984 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 26983 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 26924 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 26923 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 26865 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 26864 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 26820 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 26695 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 26639 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 26638 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 26579 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 26578 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 26536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392780288