Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq690 93.3 2e-16 seq689 93.3 2e-16 >seq690 Length=29778 Score = 93.3 bits (102), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 4054 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 4113 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 4114 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 4173 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| | ||||| || || |||||| ||| | | |||| Sbjct 4174 AATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 4213 Score = 80.6 bits (88), Expect = 1e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || || || ||| Sbjct 4701 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 4760 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || Sbjct 4761 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTC 4814 >seq689 Length=8468 Score = 93.3 bits (102), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 4741 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 4800 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 4801 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 4860 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| | ||||| || || |||||| ||| | | |||| Sbjct 4861 AATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 4900 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || || || ||| Sbjct 5391 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 5450 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 5451 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 5510 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 5511 ATCACGTTTAGGGGCGA 5527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079979558150