Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20brasilianum_20[genbank_20GCA_5F001885115.2_202016-12- 01] 953 sequences; 30,089,869 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq689 450 4e-124 seq690 304 4e-80 seq898 118 3e-24 >seq689 Length=8468 Score = 450 bits (498), Expect = 4e-124 Identities = 317/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 7447 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTCTC 7388 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 7387 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 7328 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 7327 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 7268 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 7267 AGATAGCAAGTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGA 7208 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 7207 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 7148 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 7147 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 7088 Query 535 CACTT 539 || || Sbjct 7087 CAGTT 7083 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| ||| ||||| |||||||| Sbjct 7672 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTAAA 7613 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 7612 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 7566 >seq690 Length=29778 Score = 304 bits (336), Expect = 4e-80 Identities = 246/295 (83%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC--AAGCTC 294 ||||||||||| |||||||| | ||||| ||| |||||| | ||||||||| ||||| Sbjct 6700 CTCCCACTTATACTACACCTTTTAAGTCGTTTTACAAAGCCAGACTAGAGTATAAAGCTT 6641 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 6640 AACAAGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 6581 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | ||||| ||||| |||||| |||||| |||||||| |||||||||||||| Sbjct 6580 AGATAGCATGTAGGGTCAGTGAGAATCTTATTAATCTATTCATGCTCGTCACTAATTAGA 6521 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATA-GT---TACTCCCGCCGTTTACCCGC 470 ||||||||||||||| || | |||||||||||| || | | |||||| |||| | | Sbjct 6520 TGACGAGGCATTTGGATAACCCAAGAGAGTCATACGTATATTCCCCCGCCATTTATCTGG 6461 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || | |||||||| || ||| ||||| |||| |||||||||||||||||| Sbjct 6460 GCCTAAATGAATTTCACCAAAATGATATTCAAAGCATTGGGCAGAAATCACATTG 6406 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||| ||||| ||||||| Sbjct 6992 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGCCTTTGGACATCTGCGTTTAA 6933 Query 67 GTTT---AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| ||||||||| |||||| || |||| ||||| |||| | |||| Sbjct 6932 GTTTAACAACAGATGTACCGCCCTAGTCAAATTCCCCTCCTGGCTATGT 6884 >seq898 Length=16526 Score = 118 bits (130), Expect = 3e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||| |||||||||| ||||||| |||||| | | |||||| | | | || Sbjct 3103 CTTCCACTTATGCTACACCTCTTTTGTCATTTTACAAAGCCATATTAGAGTAATGTTAAA 3162 Query 297 CAG-GGTCTTCTTTCCCCG-CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 || |||||||||||| | |||||| |||||||||||||||||| |||||||||||| Sbjct 3163 CAAAGGTCTTCTTTCCTCAACTGATTTTACCAAGCCCGTTCCCTTGGTTGTGGTTTCGCT 3222 Query 355 AGATAGT 361 ||||||| Sbjct 3223 AGATAGT 3229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635184416544