Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq194 114 2e-23 seq5 114 2e-23 >seq194 Length=887 Score = 114 bits (126), Expect = 2e-23 Identities = 188/277 (68%), Gaps = 48/277 (17%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 44 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 101 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT--GAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||||| | | | |||||| Sbjct 102 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 161 Query 119 TACCCGGACCTGTCGGCCAAGG----------------------TGAT------------ 144 |||| || | || | ||| ||| Sbjct 162 TACCTACACTTTTCAGTGGAGGAAAAATATATCGCGCGCAGGCATGACCCACGCGCAAAT 221 Query 145 ---------AG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 || ||||||| | | ||||||||||| ||||||| ||| || | |||||| Sbjct 222 ATAAATTTAAGCACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAA 281 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || ||||||||||||||| |||||| |||||||| || Sbjct 282 GGACATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 318 >seq5 Length=863952 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 717187 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 717130 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 717129 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 717070 Query 119 TACC 122 |||| Sbjct 717069 TACC 717066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995184615