Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq193 122 2e-25 seq413 87.8 3e-15 seq412 87.8 3e-15 >seq193 Length=1054 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 416 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 357 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 356 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 300 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 299 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 242 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 241 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 182 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 181 TAATCA-AGAACGAAAGTTAAGGG 159 >seq413 Length=836 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 362 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 303 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 302 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 244 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 243 AAGTTAAGGG 234 >seq412 Length=789 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 366 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 425 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 426 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 484 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 485 AAGTTAAGGG 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915193950528