Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq415 161 2e-37 seq546 93.3 9e-17 >seq415 Length=26411 Score = 161 bits (178), Expect = 2e-37 Identities = 257/364 (71%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 4418 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 4359 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4358 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 4299 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT----GCTCTAACAG 182 ||| ||| ||||||||||||| ||||| | | | | ||| | ||| | Sbjct 4298 TAGATACAGCCGCCGTTTACTATAGCTTATATATA-TATTATAATTTTAAATTATAA-AT 4241 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| |||| ||| ||| Sbjct 4240 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTTA 4181 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | || | ||| | Sbjct 4180 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAACT 4129 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | ||||||||||||||| | | | ||||||||||||||||| || | | Sbjct 4128 AAATAAGTATCTTTTCTCCCTAAGTTACAAGATAAATTTGCCGAGTTCCTTAAAAAAAAT 4069 Query 361 TCTC 364 | || Sbjct 4068 TATC 4065 >seq546 Length=6109 Score = 93.3 bits (102), Expect = 9e-17 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 3118 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 3059 Query 119 GACCGTTATAGT-TACGGCCGCCGTTTA 145 ||||||| ||| ||| ||||||||||| Sbjct 3058 GACCGTT-TAGAATACAGCCGCCGTTTA 3032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062392977536