Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq617 291 1e-76 seq5 273 4e-71 seq575 163 5e-38 seq574 136 7e-30 >seq617 Length=35443 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 34132 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 34191 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 34192 TTAGCGGGTGAACAATCCGACACTTTGGGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 34251 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 34252 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 34311 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 34312 CTGTGGTAACTTTTCAGACACCTCTA 34337 >seq5 Length=863952 Score = 273 bits (302), Expect = 4e-71 Identities = 185/206 (90%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 723262 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAATCCAGCTCACGTTCCCTA 723203 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 723202 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 723143 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||| ||||| ||||| ||||||||| ||||||||||| |||||||||||||||||| Sbjct 723142 TATCGAA-GATCATAAAGCTACGTCGCTAGGAACGCTTGGCAGCCACAAGCCAGTTATCC 723084 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 723083 CTGTGGTAACTTTTCAGACACCTCTA 723058 >seq575 Length=4269 Score = 163 bits (180), Expect = 5e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 || |||||| || |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 4264 GACTTCTGCGTCCCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCTACGTCGCT 4205 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 | || |||||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 4204 AGGAGCGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCAGACACCTCTA 4147 >seq574 Length=1689 Score = 136 bits (150), Expect = 7e-30 Identities = 81/85 (95%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 813 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 754 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 |||| ||||||||||||| || ||| Sbjct 753 TTAGCGGGTGAACAATCCGACACTT 729 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 63 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4 Query 91 TTA 93 ||| Sbjct 3 TTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854394352416