Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq194 113 9e-23 seq5 111 3e-22 >seq194 Length=887 Score = 113 bits (124), Expect = 9e-23 Identities = 202/304 (66%), Gaps = 46/304 (15%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 348 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 289 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT----- 184 |||| |||||||| | || ||| ||||||| |||||||||| | ||||||| Sbjct 288 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGATATGTAAAACGAGTGCTTA 229 Query 185 --------------------TCA-------------------TCACCTTGGCCGGAAGGT 205 ||| | ||| | | || || Sbjct 228 AATTTATATTTGCGCGTGGGTCATGCCTGCGCGCGATATATTTTTCCTCCACTGAAAAGT 169 Query 206 CTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| Sbjct 168 GTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTT 109 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| Sbjct 108 GAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTT 49 Query 325 TGTA 328 |||| Sbjct 48 TGTA 45 >seq5 Length=863952 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 717066 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 717125 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 717126 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 717185 Query 328 A 328 | Sbjct 717186 A 717186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947193739008