Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq575 462 7e-128 seq617 387 4e-105 seq5 302 1e-79 >seq575 Length=4269 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 3818 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 3759 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 3758 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 3699 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3698 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 3639 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3638 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 3579 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3578 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 3519 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 3518 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 3459 Query 535 CACTT 539 || || Sbjct 3458 CATTT 3454 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 4036 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 3977 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 3976 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 3930 >seq617 Length=35443 Score = 387 bits (428), Expect = 4e-105 Identities = 283/335 (84%), Gaps = 29/335 (9%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 34739 CTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 34798 Query 297 CAG----------------------------GGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 ||| ||||||||||||||||||||| |||||| Sbjct 34799 CAGGGTCTTCTTTCCCCGCTGATTTGGACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAG 34858 Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 34859 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAA 34918 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34919 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 34978 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 ||||||||||||||||||| |||||| ||||||||| ||| |||||||||| |||||| Sbjct 34979 GTTACTCCCGCCGTTTACCTGCGCTTCATTGAATTTCATCAAGTTGACATTCAAAGCACT 35038 Query 509 GGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||| ||| || || | || |||||| Sbjct 35039 GGGCAGAAATCACTTTGTGTTAATACCA-TTTCTG 35072 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 34448 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 34507 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 34508 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 34554 >seq5 Length=863952 Score = 302 bits (334), Expect = 1e-79 Identities = 255/307 (83%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||| ||| Sbjct 722661 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCACAA 722602 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 722601 CAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAG 722542 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||| | |||| |||| ||||| ||| Sbjct 722541 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCTA-TCAT-TATGTCA-TAATTCCATG 722485 Query 417 --ACGAGGCATTTGGCTACCTTAAGAGAG--TCATAGTTACTCCCGCCGTTTACCCGCGC 472 || | |||| || |||||||||| | | ||||||||||||||||||| | || Sbjct 722484 ACACAATGCAT----CTTGCTTAAGAGAGTTTTTTTGTTACTCCCGCCGTTTACCTGTGC 722429 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||||| ||| ||| |||||| ||||||||||||||||||||||| || || Sbjct 722428 TTAATTGAATTTCATCAAGTTGGCATTCAAAGCACTGGGCAGAAATCACATTGTGTTAAT 722369 Query 533 ATCACTT 539 | || || Sbjct 722368 ACCATTT 722362 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| || | |||| Sbjct 722947 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTACATTATT 722888 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||| || || ||||||||||||||| | ||||| Sbjct 722887 GTTTAACAGATGTACCG-CCTAGTCAAACTCCCCACCTGGCTATGTC 722842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635189191328