Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20adami_20[genbank_20GCA_5F900095565.1_202016- 11-23] 661 sequences; 19,350,400 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq193 219 1e-54 seq107 215 2e-53 seq105 132 1e-28 seq5 118 3e-24 >seq193 Length=1054 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 670 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 729 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 730 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 789 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 790 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 848 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 849 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 893 >seq107 Length=749 Score = 215 bits (238), Expect = 2e-53 Identities = 183/224 (82%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 48 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 107 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 108 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 167 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 168 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 227 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 228 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 271 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 394 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 450 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 451 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 510 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 511 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 553 >seq105 Length=1030 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 260 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 316 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 317 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 376 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 377 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 419 >seq5 Length=863952 Score = 118 bits (130), Expect = 3e-24 Identities = 94/112 (84%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| |||| | | || | Sbjct 716634 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCAT 716575 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 716574 ATACTTTCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 716523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510390016256