Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2682 102 3e-19 seq1703 100 1e-18 seq2470 93.3 2e-16 seq8352 77.0 1e-11 >seq2682 Length=1825 Score = 102 bits (112), Expect = 3e-19 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 36 CGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||| |||| || || ||| | || | | | | || ||||| |||||| Sbjct 1286 CGTCGAGTCGTGTTCTTTGAGATTGGAGCACAAATTCGTGTGATACATTTCACATAAAGC 1345 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 |||||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 1346 TAAATATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACT 1405 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 1406 CAGGAATGAGGCTTAAATAGTACCTGAAATCGTTAAGATGGAA 1448 >seq1703 Length=2632 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 1518 GAGTAGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATAGATTTCACATAAAGCTAAA 1577 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1578 TATTTGTAGGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1637 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| || || |||||| ||| | | |||| Sbjct 1638 AATGAGATTTAAATAGTACCTGAAATCGTTAAGATGGAA 1676 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||||| || ||| |||| |||||||| || ||||||| || || || ||| Sbjct 2147 TTGAGTAAAAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 2206 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 2207 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 2266 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 2267 ATCACGTTTAGGGGCGA 2283 >seq2470 Length=1962 Score = 93.3 bits (102), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 1117 GAGTTGTGTTCTTTGAGATTGGAGCACGAATATGTGTGATACATTTCACATAAAGCTAAA 1058 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 1057 TATTTGTAGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 998 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || ||| ||||| | || |||||| ||| Sbjct 997 AATGAGGTTTAAACAATACCTGAAATCGTT 968 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 466 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 407 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 406 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 347 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 346 ATCACGTTTAGGGGCGA 330 >seq8352 Length=633 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 522 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 463 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 462 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 403 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 402 ATCACGTTTAGGGGCGA 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079770699500