Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2685 161 2e-37 seq88 161 2e-37 seq262 93.3 9e-17 >seq2685 Length=1823 Score = 161 bits (178), Expect = 2e-37 Identities = 257/364 (71%), Gaps = 16/364 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 679 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 620 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 619 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 560 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT----GCTCTAACAG 182 ||| ||| ||||||||||||| ||||| | | | | ||| | ||| | Sbjct 559 TAGATACAGCCGCCGTTTACTATAGCTTATATATA-TATTATAATTTTAAATTATAA-AT 502 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| |||| ||| ||| Sbjct 501 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTTA 442 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | || | ||| | Sbjct 441 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAACT 390 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | ||||||||||||||| | | | ||||||||||||||||| || | | Sbjct 389 AAATAAGTATCTTTTCTCCCTAAGTTACAAGATAAATTTGCCGAGTTCCTTAAAAAAAAT 330 Query 361 TCTC 364 | || Sbjct 329 TATC 326 >seq88 Length=8487 Score = 161 bits (178), Expect = 2e-37 Identities = 257/364 (71%), Gaps = 16/364 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 1218 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 1277 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1278 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 1337 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT----GCTCTAACAG 182 ||| ||| ||||||||||||| ||||| | | | | ||| | ||| | Sbjct 1338 TAGATACAGCCGCCGTTTACTATAGCTTATATATA-TATTATAATTTTAAATTATAA-AT 1395 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| |||| ||| ||| Sbjct 1396 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTTA 1455 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | || | ||| | Sbjct 1456 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAACT 1507 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | ||||||||||||||| | | | ||||||||||||||||| || | | Sbjct 1508 AAATAAGTATCTTTTCTCCCTAAGTTACAAGATAAATTTGCCGAGTTCCTTAAAAAAAAT 1567 Query 361 TCTC 364 | || Sbjct 1568 TATC 1571 >seq262 Length=6349 Score = 93.3 bits (102), Expect = 9e-17 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 5652 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 5593 Query 119 GACCGTTATAGT-TACGGCCGCCGTTTA 145 ||||||| ||| ||| ||||||||||| Sbjct 5592 GACCGTT-TAGAATACAGCCGCCGTTTA 5566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062286429440