Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2685 111 2e-22 seq88 111 2e-22 >seq2685 Length=1823 Score = 111 bits (122), Expect = 2e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||| Sbjct 1238 GATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGC 1179 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | |||||| || |||| | || |||||| || ||||||||||| Sbjct 1178 GAACAGACTTACCCTTAAAACATACTACTGCTTTAGGATGCGATAAGCCGACATCG 1123 >seq88 Length=8487 Score = 111 bits (122), Expect = 2e-22 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||| Sbjct 659 GATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTATCGCTTTAATAGGC 718 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | |||||| || |||| | || |||||| || ||||||||||| Sbjct 719 GAACAGACTTACCCTTAAAACATACTACTGCTTTAGGATGCGATAAGCCGACATCG 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780719140840